feat: support ZFA ontology (with ZFS terms imported) in 5.2.1-experim…

…ental (#234)
chanzuckerberg · Oct 23, 2024 · dff7aad · dff7aad
1 parent 9c4292d
commit dff7aad
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Showing 6 changed files with 35 additions and 1 deletion.
diff --git a/api/python/ontology-assets-version.txt b/api/python/ontology-assets-version.txt
@@ -1 +1 @@
-35041597fa4154a02c9c2b1e15f703890fecd372
+80e9f1eea3f87c21aad9d045f5c9e3b7b74bc78b
diff --git a/api/python/src/cellxgene_ontology_guide/entities.py b/api/python/src/cellxgene_ontology_guide/entities.py
@@ -17,6 +17,9 @@ class Ontology(Enum):
     MmusDv = "mmusdv"
     PATO = "pato"
     NCBITaxon = "ncbitaxon"
+    FBbt = "fbbt"
+    FBdv = "fbdv"
+    ZFA = "zfa"
 
 
 class CuratedOntologyTermList(Enum):

diff --git a/asset-schemas/ontology_info_schema.json b/asset-schemas/ontology_info_schema.json
@@ -41,6 +41,15 @@
             },
             "PATO": {
               "$ref": "#/definitions/ontologyEntry"
+            },
+            "FBbt": {
+              "$ref": "#/definitions/ontologyEntry"
+            },
+            "FBdv": {
+              "$ref": "#/definitions/ontologyEntry"
+            },
+            "ZFA": {
+              "$ref": "#/definitions/ontologyEntry"
             }
           }
         }

diff --git a/asset-schemas/ontology_term_id_schema.json b/asset-schemas/ontology_term_id_schema.json
@@ -46,6 +46,14 @@
       "type": "string",
       "pattern": "^FBdv+:[0-9]+$"
     },
+    "ZFA_term_id": {
+      "type": "string",
+      "pattern": "^ZFA+:[0-9]+$"
+    },
+    "ZFS_term_id": {
+      "type": "string",
+      "pattern": "^ZFS+:[0-9]+$"
+    },
     "supported_term_id": {
       "anyOf": [
         {
@@ -82,6 +90,12 @@
         ,
         {
           "$ref": "#/definitions/FBdv_term_id"
+        },
+        {
+          "$ref": "#/definitions/ZFA_term_id"
+        },
+        {
+          "$ref": "#/definitions/ZFS_term_id"
         }
       ]
     }

diff --git a/ontology-assets/ZFA-ontology-v2022-12-09.json.gz b/ontology-assets/ZFA-ontology-v2022-12-09.json.gz
diff --git a/ontology-assets/ontology_info.json b/ontology-assets/ontology_info.json
@@ -55,6 +55,14 @@
         "version": "v2024-10-17",
         "source": "https://github.com/FlyBase/drosophila-developmental-ontology/releases/download",
         "filename": "fbdv.owl"
+      },
+      "ZFA": {
+        "version": "v2022-12-09",
+        "source": "https://github.com/ZFIN/zebrafish-anatomical-ontology/raw",
+        "filename": "zfa.owl",
+        "additional_ontologies": [
+          "ZFS"
+        ]
       }
     }
   },