chore: add test to ensure all supported ontologies are supported by C… #197
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| on: | |
| push: | |
| branches: | |
| - main | |
| permissions: | |
| contents: write | |
| pull-requests: write | |
| concurrency: | |
| group: release-please | |
| cancel-in-progress: false | |
| name: release-please | |
| jobs: | |
| release-please: | |
| runs-on: [self-hosted, ARM64] | |
| steps: | |
| - name: release please | |
| uses: google-github-actions/[email protected] | |
| id: release | |
| with: | |
| manifest-file: ".release-please-manifest.json" | |
| config-file: "release-please-config.json" | |
| target-branch: "main" | |
| outputs: | |
| ontology_assets_upload_url: ${{ steps.release.outputs.ontology-assets--upload_url }} | |
| paths_released: ${{ steps.release.outputs.paths_released }} | |
| add-release-artifacts: | |
| runs-on: [ubuntu-latest] | |
| needs: release-please | |
| if: contains(needs.release-please.outputs.paths_released, 'ontology-assets') | |
| strategy: | |
| matrix: | |
| include: | |
| - file_name: "ontology_info.json" | |
| content_type: "application/json" | |
| - file_name: "cell_class_list.json" | |
| content_type: "application/json" | |
| - file_name: "cell_subclass_list.json" | |
| content_type: "application/json" | |
| - file_name: "organ_list.json" | |
| content_type: "application/json" | |
| - file_name: "tissue_general_list.json" | |
| content_type: "application/json" | |
| - file_name: "system_list.json" | |
| content_type: "application/json" | |
| - file_name: "uberon_development_stage_list.json" | |
| content_type: "application/json" | |
| steps: | |
| - name: Checkout ref branch | |
| uses: actions/checkout@v4 | |
| with: | |
| ref: ${{ github.ref }} | |
| fetch-depth: 1 | |
| - name: Upload release asset | |
| uses: actions/upload-release-asset@v1 | |
| with: | |
| upload_url: ${{ needs.release-please.outputs.ontology_assets_upload_url }} | |
| asset_path: "ontology-assets/${{ matrix.file_name }}" | |
| asset_name: ${{ matrix.file_name }} | |
| asset_content_type: ${{ matrix.content_type }} | |
| env: | |
| GITHUB_TOKEN: ${{ github.token }} | |
| publish-pypi-package: | |
| runs-on: [ubuntu-latest] | |
| needs: release-please | |
| environment: | |
| name: pypi | |
| url: https://pypi.org/p/cellxgene-ontology-guide | |
| permissions: | |
| id-token: write # IMPORTANT: this permission is mandatory for trusted publishing | |
| if: contains(needs.release-please.outputs.paths_released, 'api/python') | |
| steps: | |
| - name: Checkout ref branch | |
| uses: actions/checkout@v4 | |
| with: | |
| ref: ${{ github.ref }} | |
| fetch-depth: 0 | |
| - name: Set up Python 3.11 | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: 3.11 | |
| - name: build | |
| run: | | |
| make build -C api/python | |
| - name: Publish distribution 📦 to PyPI | |
| uses: pypa/gh-action-pypi-publish@release/v1 | |
| with: | |
| packages-dir: api/python/dist |