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Reorganize betydb data entry documentation #7

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dlebauer opened this issue Apr 8, 2019 · 5 comments
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Reorganize betydb data entry documentation #7

dlebauer opened this issue Apr 8, 2019 · 5 comments
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@dlebauer
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dlebauer commented Apr 8, 2019

Betydb data entry docs have been migrated to bookdown https://github.com/PecanProject/betydbdoc-dataentry

We need the following updates:

  • Metadata section currently assumes data is being entered via the web interface
    • need to split this out into rails web UI, rails API, SQL, R, and BETYdb-YABA
      • can include code that you wrote up and is currently in OSF
    • describe which of these will be the preferred methods (web UI, rails API and BETYdb YABA) and when
      • web UI
        • for metadata is useful for a person who want to enter 1-10 records into a table; was originally designed around extracting meta-data from published papers; does not scale.
        • for uploads of long tables of traits by a person
      • bulk upload api -- for automated bulk uploads
      • BETYdb-YABA and its python client is for automated and bulk uploads to many of the tables
      • SQL and R are handy when you need features that the above don't implement and also for fixing data.
@kimberlyh66 kimberlyh66 self-assigned this Apr 18, 2019
@Chris-Schnaufer
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Kimberly needs to discuss with David

@Chris-Schnaufer
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Convo resulted in list of tasks to be done at top of ticket.

@dlebauer
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@kimberlyh66
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Updates to the metadata entry section have been made. See pull request PecanProject/betydbdoc-dataentry#4 for details.

SQL function from PecanProject/bety#185 was not included since problems with function were mentioned (see comment linked above)

@Chris-Schnaufer
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Waiting for Pull Request to complete

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