From c76ad7811bdbd61d557434acd2e2af7c430d728c Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Gordon=20J=2E=20K=C3=B6hn?= Date: Fri, 13 Sep 2024 14:14:54 +0200 Subject: [PATCH] logging --- scripts/amplicon_covs_click.py | 26 ++++++++++++-------------- 1 file changed, 12 insertions(+), 14 deletions(-) diff --git a/scripts/amplicon_covs_click.py b/scripts/amplicon_covs_click.py index a8a6fa7..39cf73c 100644 --- a/scripts/amplicon_covs_click.py +++ b/scripts/amplicon_covs_click.py @@ -335,20 +335,18 @@ def main( make_cov_heatmap(all_covs, os.path.join(outdir, "cov_heatmap.pdf")) - print("Making median cov hist") - - make_median_cov_hist(all_covs, os.path.join(outdir, "median_cov_hist.pdf")) - make_median_coverage_barplot( - all_covs, os.path.join(outdir, "median_coverage_barplot.pdf") - ) - - make_cov_heatmap(all_covs_frac, os.path.join(outdir, "cov_heatmap_norm.pdf")) - make_median_cov_hist( - all_covs_frac, os.path.join(outdir, "median_cov_hist_norm.pdf") - ) - make_median_coverage_barplot( - all_covs_frac, os.path.join(outdir, "median_coverage_barplot_norm.pdf") - ) + # make_median_cov_hist(all_covs, os.path.join(outdir, "median_cov_hist.pdf")) + # make_median_coverage_barplot( + # all_covs, os.path.join(outdir, "median_coverage_barplot.pdf") + # ) + + # make_cov_heatmap(all_covs_frac, os.path.join(outdir, "cov_heatmap_norm.pdf")) + # make_median_cov_hist( + # all_covs_frac, os.path.join(outdir, "median_cov_hist_norm.pdf") + # ) + # make_median_coverage_barplot( + # all_covs_frac, os.path.join(outdir, "median_coverage_barplot_norm.pdf") + # ) if __name__ == "__main__":