diff --git a/workflows/amplicon_cov.smk b/workflows/amplicon_cov.smk index 459bcda..4c5f99a 100644 --- a/workflows/amplicon_cov.smk +++ b/workflows/amplicon_cov.smk @@ -65,7 +65,7 @@ rule get_samples_per_batch: samples_batch = "/cluster/project/pangolin/work-amplicon-coverage/test_data/samples{batch}.tsv" shell: """ - grep {params.batch} {input.samples_list} > {output.samples_batch} + grep {batch} {input.samples_list} > {output.samples_batch} """ rule get_coverage_for_batch: