diff --git a/workflows/base_coverage.smk b/workflows/base_coverage.smk index ed5ca2f..03f7557 100644 --- a/workflows/base_coverage.smk +++ b/workflows/base_coverage.smk @@ -81,7 +81,7 @@ rule total_coverage_depth: coverage_tsv_fps=total_coverage_dir, mutations_of_interest_fp=input.mutations_of_interest, timeline_file_dir=input.timeline, - output_file=output.output_file + output_file=output.output_file, startdate = params.startdate, enddate = params.enddate, location = params.location