From 2af4c3886cae64cdec35442b22ed7f8f4b46682b Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Gordon=20J=2E=20K=C3=B6hn?= Date: Fri, 13 Sep 2024 11:45:46 +0200 Subject: [PATCH] fix wildcard erro --- workflows/amplicon_cov.smk | 10 +++++----- 1 file changed, 5 insertions(+), 5 deletions(-) diff --git a/workflows/amplicon_cov.smk b/workflows/amplicon_cov.smk index 97d87dd..40a33a8 100644 --- a/workflows/amplicon_cov.smk +++ b/workflows/amplicon_cov.smk @@ -79,8 +79,8 @@ rule get_coverage_for_batch: """ input: samples = f"{output_dir}20240705_AAFH52MM5/cov_heatmap.pdf", - median_cov_hist = output_dir + "{batch}/median_cov_hist.pdf", - make_median_coverage_barplot = output_dir + "{batch}/make_median_coverage_barplot.pdf", - cov_heatmap_norm = output_dir + "{batch}/cov_heatmap_norm.pdf", - median_cov_hist_norm = output_dir + "{batch}/median_cov_hist_norm.pdf", - median_coverage_barplot_norm = output_dir + "{batch}/median_coverage_barplot_norm.pdf" \ No newline at end of file + median_cov_hist = f"{output_dir}20240705_AAFH52MM5/median_cov_hist.pdf", + make_median_coverage_barplot = f"{output_dir}20240705_AAFH52MM5/make_median_coverage_barplot.pdf", + cov_heatmap_norm = output_dir + f"{output_dir}20240705_AAFH52MM5/cov_heatmap_norm.pdf", + median_cov_hist_norm = output_dir + f"{output_dir}20240705_AAFH52MM5/median_cov_hist_norm.pdf", + median_coverage_barplot_norm = f"{output_dir}20240705_AAFH52MM5/median_coverage_barplot_norm.pdf" \ No newline at end of file