From 06c12b0193a6d707aea185d8f0a6b48776bbb136 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Gordon=20J=2E=20K=C3=B6hn?= <gordon@koehn.net>
Date: Fri, 13 Sep 2024 14:23:28 +0200
Subject: [PATCH] logging for make_median_cov_hist

---
 scripts/amplicon_covs_click.py | 44 ++++++++++++++++++++++++----------
 1 file changed, 32 insertions(+), 12 deletions(-)

diff --git a/scripts/amplicon_covs_click.py b/scripts/amplicon_covs_click.py
index e5fbba2..2d44ea9 100644
--- a/scripts/amplicon_covs_click.py
+++ b/scripts/amplicon_covs_click.py
@@ -336,18 +336,38 @@ def main(
 
         make_cov_heatmap(all_covs, os.path.join(outdir, "cov_heatmap.pdf"))
 
-        make_median_cov_hist(all_covs, os.path.join(outdir, "median_cov_hist.pdf"))
-        # make_median_coverage_barplot(
-        #     all_covs, os.path.join(outdir, "median_coverage_barplot.pdf")
-        # )
-
-        # make_cov_heatmap(all_covs_frac, os.path.join(outdir, "cov_heatmap_norm.pdf"))
-        # make_median_cov_hist(
-        #     all_covs_frac, os.path.join(outdir, "median_cov_hist_norm.pdf")
-        # )
-        # make_median_coverage_barplot(
-        #     all_covs_frac, os.path.join(outdir, "median_coverage_barplot_norm.pdf")
-        # )
+        try:
+            make_median_cov_hist(all_covs, os.path.join(outdir, "median_cov_hist.pdf"))
+        except Exception as e:
+            click.echo(f"Error generating median_cov_hist plot: {str(e)}")
+
+        try:
+            make_median_coverage_barplot(
+                all_covs, os.path.join(outdir, "median_coverage_barplot.pdf")
+            )
+        except Exception as e:
+            click.echo(f"Error generating median_coverage_barplot plot: {str(e)}")
+
+        try:
+            make_cov_heatmap(
+                all_covs_frac, os.path.join(outdir, "cov_heatmap_norm.pdf")
+            )
+        except Exception as e:
+            click.echo(f"Error generating cov_heatmap_norm plot: {str(e)}")
+
+        try:
+            make_median_cov_hist(
+                all_covs_frac, os.path.join(outdir, "median_cov_hist_norm.pdf")
+            )
+        except Exception as e:
+            click.echo(f"Error generating median_cov_hist_norm plot: {str(e)}")
+
+        try:
+            make_median_coverage_barplot(
+                all_covs_frac, os.path.join(outdir, "median_coverage_barplot_norm.pdf")
+            )
+        except Exception as e:
+            click.echo(f"Error generating median_coverage_barplot_norm plot: {str(e)}")
 
 
 if __name__ == "__main__":