From 0dae2c1298d2efab72e2be3a2db9511efbdae2cc Mon Sep 17 00:00:00 2001
From: Ivan Blagoev Topolsky <ivan.topolsky@bsse.ethz.ch>
Date: Fri, 2 Jun 2023 11:35:43 +0200
Subject: [PATCH] Compress LFS objects

 - Tallymut Zstd compressed to save on Github LFS bandwidth
---
 .gitattributes                           | 2 +-
 preprint/WwSmoothingKernel.ipynb         | 2 +-
 preprint/data/tallymut_line_full.tsv     | 3 ---
 preprint/data/tallymut_line_full.tsv.zst | 3 +++
 tests/test_integration.py                | 2 +-
 5 files changed, 6 insertions(+), 6 deletions(-)
 delete mode 100644 preprint/data/tallymut_line_full.tsv
 create mode 100644 preprint/data/tallymut_line_full.tsv.zst

diff --git a/.gitattributes b/.gitattributes
index 366532e..dbca37a 100644
--- a/.gitattributes
+++ b/.gitattributes
@@ -1,2 +1,2 @@
 .git_archival.json  export-subst
-tallymut_line_full.tsv filter=lfs diff=lfs merge=lfs -text
+tallymut_line_full.tsv.zst filter=lfs diff=lfs merge=lfs -text
diff --git a/preprint/WwSmoothingKernel.ipynb b/preprint/WwSmoothingKernel.ipynb
index 1865c4d..d988294 100644
--- a/preprint/WwSmoothingKernel.ipynb
+++ b/preprint/WwSmoothingKernel.ipynb
@@ -90,7 +90,7 @@
    "source": [
     "# Overwrite globals set by WwDec.main:\n",
     "# temporary, globals\n",
-    "tally_data = \"./data/tallymut_line_full.tsv\"\n",
+    "tally_data = \"./data/tallymut_line_full.tsv.zst\"\n",
     "out_dir = (\n",
     "    \"./out\"\n",
     ")\n",
diff --git a/preprint/data/tallymut_line_full.tsv b/preprint/data/tallymut_line_full.tsv
deleted file mode 100644
index fb71297..0000000
--- a/preprint/data/tallymut_line_full.tsv
+++ /dev/null
@@ -1,3 +0,0 @@
-version https://git-lfs.github.com/spec/v1
-oid sha256:9797b0c77fa71b69c253e2f79097510edd225fb532d43b62728ee6a061debf49
-size 145451728
diff --git a/preprint/data/tallymut_line_full.tsv.zst b/preprint/data/tallymut_line_full.tsv.zst
new file mode 100644
index 0000000..bb3bae3
--- /dev/null
+++ b/preprint/data/tallymut_line_full.tsv.zst
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:cbccee6b1834ad1dffce1752121904acc97f9e8be6f4584f4d0a8d0460f1fcea
+size 11270510
diff --git a/tests/test_integration.py b/tests/test_integration.py
index 807edd5..99a7efc 100644
--- a/tests/test_integration.py
+++ b/tests/test_integration.py
@@ -19,6 +19,6 @@ def test_workflow():
             "--deconv-config=presets/deconv_linear.yaml",
             "--location=Zürich (ZH)",
             "--seed=42",
-            "preprint/data/tallymut_line_full.tsv",
+            "preprint/data/tallymut_line_full.tsv.zst",
         ]
     )