Schneider Lab Conversion Progress

[pauladkisson]

Schneider Lab Conversion Progress

55/330 hrs

Pre-Conversion

• Repo Setup
• Initial Inspection and Notes: Delineation of Projects, Experiments and Data Streams: notes
• Identify and request missing data/metadata/READMEs: In progress
• Acquire all data needed for conversion: In progress

Conversion

Project 1: Behavior + Ephys + Ogen (Grant Zempolich)

• Convert all sessions: Full Dataset #12

Behavior

• MatBehavior Interface: Prototype Behavior Interface #3, Add more detailed descriptions for various metadata fields #7, Update behavior #8
• Video Interface: Video #4

Ephys

• OpenEphys Interface: Ephys #2
• Phy/Kilosort Interface: Ephys #2

Ogen

• OptogeneticInterface: Opto #9

Intrinsic Signal Imaging

• IntrinsicSignalImagingInterface: Intrinsic signal imaging #10

Temporal Alignment

• Align ephys, behavior, and video: Temporal Alignment #6

Project 2: Behavior + Ophys + Ogen (???)

• Convert all sessions?

Behavior

• Adapt BehaviorInterface as necessary

Ophys

• ImagingExtractorInterface

Ogen

• Adapt OptogeneticInterface as necessary

Temporal Alignment

• Align ophys, behavior, and video

Project 3: VR Behavior + Neuropixels Ephys + Ogen (???)

• Convert all sessions?

Behavior

• Adapt BehaviorInterface to VR paradigm

Ephys

• Neuropixels Interface
• Adapt Phy/Kilosort Interface as necessary

Ogen

• Adapt OptogeneticInterface as necessary

Intrinsic Signal Imaging

• Adapt IntrinsicSignalImagingInterface as necessary

Temporal Alignment

• Align ephys, behavior, and video

Project 4: SLEAP Behavior + White Matter Ephys + Ogen (???)

• Convert all sessions?

Behavior

• Adapt BehaviorInterface as necessary
• SLEAPInterface

Ephys

• Adapt OpenEphys Interface as necessary
• Adapt Phy/Kilosort Interface as necessary

Ogen

• Adapt OptogeneticInterface as necessary

Intrinsic Signal Imaging

• Adapt IntrinsicSignalImagingInterface as necessary

Temporal Alignment

• Align ephys, behavior, and video

Post-Conversion

• Setup Dandiset(s)
• Inspection/Validation
• README/Documentation
• Example Notebooks
• Final Meeting