NAMESPACE

# Generated by roxygen2: do not edit by hand

S3method(plot,rev_cohort)
S3method(plot,rev_cohort_fit)
S3method(print,rev_cohort)
S3method(print,rev_cohort_fit)
export(CCF)
export(CCF_clusters)
export(CCF_parser)
export(Clonal_cluster)
export(Cluster)
export(DET_index)
export(Data)
export(Drivers)
export(ITransfer)
export(Jackknife_cluster_stability)
export(Jackknife_patient_coclustering)
export(Jackknife_trajectories_stability)
export(Phylo)
export(Samples)
export(Stats)
export(Stats_cohort)
export(Stats_drivers)
export(Stats_fits)
export(Stats_trees)
export(Subclonal)
export(Truncal)
export(compute_clone_trees)
export(compute_mutation_trees)
export(distinct_palette_few)
export(distinct_palette_many)
export(get_features)
export(gradient_palette)
export(input_custom_trees)
export(plot_DET_index)
export(plot_clusters)
export(plot_dendrogram)
export(plot_drivers_clonality)
export(plot_drivers_graph)
export(plot_drivers_occurrence)
export(plot_jackknife_cluster_stability)
export(plot_jackknife_coclustering)
export(plot_jackknife_trajectories_stability)
export(plot_patient_CCF_histogram)
export(plot_patient_data)
export(plot_patient_mutation_burden)
export(plot_patient_oncoprint)
export(plot_patient_trees)
export(plot_patient_trees_scores)
export(plot_penalty)
export(plot_trajectories_per_cluster)
export(remove_drivers)
export(remove_patients)
export(revolver_check_cohort)
export(revolver_cluster)
export(revolver_cohort)
export(revolver_fit)
export(revolver_jackknife)
import(RColorBrewer)
import(clisymbols)
import(cluster)
import(crayon)
import(ctree)
import(dendextend)
import(dynamicTreeCut)
import(easypar)
import(evoverse.datasets)
import(ggdendro)
import(ggpubr)
import(ggraph)
import(ggrepel)
import(igraph)
import(mtree)
import(pio)
import(tidygraph)
import(tidyverse)
importFrom(stats,sd)
importFrom(utils,combn)