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lint #37

Workflow file for this run

name: Test and lint
on:
pull_request:
branches: ["main"]
push:
branches: ["main"]
jobs:
build-and-test-qiime2-amplicon-2024-5:
runs-on: ${{ matrix.os }}
strategy:
matrix:
os: [ubuntu-latest, macos-13]
steps:
- uses: actions/checkout@v2
- name: Set up Conda
uses: conda-incubator/setup-miniconda@v3
with:
activate-environment: q2-qsip2-qiime2-amplicon-2024.5
environment-file: environments/q2-qsip2-qiime2-amplicon-2024.5.yml
auto-activate-base: false
- name: Install plugin
shell: bash -l {0}
run: make install
env:
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
- name: Run tests
shell: bash -l {0}
run: make test
lint:
runs-on: ubuntu-latest
steps:
- name: checkout source
uses: actions/checkout@v3
- name: set up python 3.11
uses: actions/setup-python@v4
with:
python-version: 3.11
- name: install dependencies
run: |
python -m pip install --upgrade pip
pip install -q https://github.com/qiime2/q2lint/archive/master.zip
pip install -q flake8
- name: run flake8
run: flake8
- name: run q2lint
run: q2lint