From e1cb96c8c2644ce5c1d51e0f8e7f6f5c9eeae8e6 Mon Sep 17 00:00:00 2001 From: pieterlukasse Date: Wed, 4 Dec 2024 10:10:07 +0100 Subject: [PATCH] Improve data loading docs ...and fix some broken links --- docs/Data-Loading.md | 10 +++++++--- 1 file changed, 7 insertions(+), 3 deletions(-) diff --git a/docs/Data-Loading.md b/docs/Data-Loading.md index 11e6c4794ce..5911dae03ec 100644 --- a/docs/Data-Loading.md +++ b/docs/Data-Loading.md @@ -48,10 +48,14 @@ There are just a few rules to follow: ## Validating your study data Once all files are in place and follow the proper format, you can [validate your files using the dataset validator script](/Using-the-dataset-validator.md). -The validation can be run standalone, but it is also integrated into the [metaImport script](/Using-the-metaImport-script.md), which validates the data and then loads it if validation succeeds. +The validation can be run standalone, but it is also integrated into the [metaImport script](./Using-the-metaImport-script.md), which validates the data and then loads it if validation succeeds. ## Loading Data -To load the data into cBioPortal, the [metaImport script](/Using-the-metaImport-script.md) has to be used. This script first validates the data and, if validation succeeds, loads the data. +To load the data into cBioPortal, the [metaImport script](./Using-the-metaImport-script.md) has to be used. This script first validates the data and, if validation succeeds, loads the data. + +### Loading Data to a portal that has Authentication enabled + +See also [Offline validation](./Using-the-dataset-validator.md#offline-validation). ### Incremental Loading @@ -65,4 +69,4 @@ To remove a study, the [cbioportalImporter script](/Data-Loading-Maintaining-Stu Examples for the different types of data are available on the [File Formats](/File-Formats.md) page. The Provisional TCGA studies, downloadable from the [Data Sets section](https://www.cbioportal.org/datasets) are complete studies that can be used as reference when creating data files. ## Public Virtual Studies -If your new study data is a subset or a combination of existing studies in the system, consider using [Public Virtual Studies](./Create-And-Publish-Virtual-Study.md) instead of duplicating data. \ No newline at end of file +If your new study data is a subset or a combination of existing studies in the system, consider using [Public Virtual Studies](./Create-And-Publish-Virtual-Study.md) instead of duplicating data.