To reproduce results for
Strong spatial embedding of social networks generates non-standard epidemic dynamics independent of degree distribution and clustering
PNAS 2020
David J. Haw, Rachael Pung, Jonathan M. Read, Steven Riley
Please also contact David Haw on [email protected] or Steven Riley on [email protected] to check if there is an updated version of these scripts merged into more recent versions of the network generation code.
.Rdata files contain all networks used for the study. These can be generated in the scenarios/ebola directory, but are provided here for convenience. The README.md in the root directory explains how to use the R and matlab code.