From 0b30604bdf0bee61751509cd6453b45a5a18d9ba Mon Sep 17 00:00:00 2001
From: dhaw <d.haw@imperial.ac.uk>
Date: Fri, 28 Feb 2020 16:06:21 +0000
Subject: [PATCH] Delete RPdiffAlphaProcessEpis.m

---
 src/RPdiffAlphaProcessEpis.m | 46 ------------------------------------
 1 file changed, 46 deletions(-)
 delete mode 100644 src/RPdiffAlphaProcessEpis.m

diff --git a/src/RPdiffAlphaProcessEpis.m b/src/RPdiffAlphaProcessEpis.m
deleted file mode 100644
index 6e0b1fb..0000000
--- a/src/RPdiffAlphaProcessEpis.m
+++ /dev/null
@@ -1,46 +0,0 @@
-function [f,g,h]=RPdiffAlphaProcessEpis
-a=(0:1:6);%Alpha values
-n=10000; lruns=10;
-la=length(a);
-P=zeros(la,lruns); Z=P;%5=max poss runs;
-epi=cell(la,1);
-%
-lepi=300;%(Max) length of incidence vector
-epiz=zeros(lepi,lruns);
-[epi{:}]=deal(epiz);
-fpath='..\..\..\Downloads\SRebola\id_spatial_sim-master\scenarios\ebola\output\epiDHh4w30pp2333r2p2_alpha';
-for i=1:la
-    ai=a(i);
-    %events=importdata(strcat('DH_h4w120pp05_alpha',num2str(ai),'_pset_0_Events.out'));%,' ',1,0);
-    events=importdata(fullfile(strcat(fpath,num2str(ai),'_pset_0_Events.out')));
-    %DH1: DH4_30_p3_2_alpha
-    %DH2: DH_h4w100pp08_alpha
-    %DH_h4w120pp05_alpha
-    %
-    run=events.data(:,1);%events(2:end,1);
-    day=events.data(:,2);%events(2:end,2);
-    event=events.data(:,3);%events(3:10:end);%(2:end,3);
-    %index=events(2:end,4);
-    runs=unique(run);
-    lruns=length(runs);
-    for j=1:lruns
-        runj=runs(j);
-        d=day(run==runj)+1;
-        ev=event(run==runj);
-        lev=length(ev); zev=zeros(lev,1);
-        zev(ev==0)=1;
-        %zev=ev; zev(zev>0)=1;
-        x=accumarray(d,zev);
-        [peak,~]=max(x);
-        z=sum(zev);
-        P(i,j)=peak/n; Z(i,j)=z/n;
-        %For full epidemics:
-        epi{i}(1:length(x),j)=x;
-    end
-    zevAll=event; zevAll(zevAll>0)=1; dayAll=day+1;
-    x=accumarray(dayAll,zevAll);
-    epi{i}=x/n/lruns;
-    clear events zevAll dayAll
-end
-f=P; g=Z; h=epi;
-save('allEpis.mat','P','Z','epi')
\ No newline at end of file