Update DiffBind on compute canada

[ericloud]

Hi Genpipe team,

I have an issue with DiffBind, which seems to be fix in a new version DiffBind_3.4.8, see:

• https://support.bioconductor.org/p/9141904/

The last version available on compute canada cluster is DiffBind_3.0.15, in the module R_Bioconductor-4.0.3_3.12.
New version of R_Bioconductor don't seems to have DiffBind installed.

Could you install an updated version of DiffBind on mugqic/R_Bioconductor module, which work with chipseq pipeline ?

Thanks for your help,
Eric.

[ericloud]

I confirm that execute genpipes with last version of DiffBind, fix the issue.
I have install the last version of DiffBind on R/4.3.1 on a local cluster and the script $R_TOOLS/DiffBind.R of GenPipes works perfectly fine now.
On calcul canada I have the same issue explain in my previous message.

Best,
Eric.

[MareikeJaniak]

Hi Eric,
Again, apologies for the delayed response! I believe that this issue has been addressed, the latest version of the mugqic/R_Bioconductor module is 4.2.2_3.16 which includes DiffBind 3.8.4.
For a speedier response, it's best to open a ticket on our HelpDesk: https://genpipes.readthedocs.io/en/genpipes-v4.4.2/support/how_to_get_support.html
Best,
Mareike