diff --git a/tools/get_sbml_model/get_sbml_model.xml b/tools/get_sbml_model/get_sbml_model.xml index 62c93b42..63e22322 100644 --- a/tools/get_sbml_model/get_sbml_model.xml +++ b/tools/get_sbml_model/get_sbml_model.xml @@ -1,4 +1,4 @@ - + Get an SBML model (BiGG) curl @@ -10,23 +10,23 @@ '$model' && + #else + python -m taxonid '${cond_src.hostname}' --output-file tmpfile && + echo "#ID" > '$taxid' && + cat tmpfile >> '$taxid' && #end if + echo "listdir:"; + ls; python '$__tool_directory__/'get_infos.py #if str($cond_src.from_src) == 'from_bigg' '$model' + --taxid '$taxid' #else '${cond_src.input_file}' #end if --hostid '${cond_src.hostid}' --comp '$compartments' --biomass '$biomass' - #if str($cond_src.from_src) == 'from_bigg' - --taxid '$taxid' - #else - python -m taxonid '${cond_src.hostid}' --output-file tmpfile - echo "#ID" > '$taxid' - cat tmpfile >> '$taxid' - #end if ]]> @@ -35,9 +35,12 @@ - + + + + @@ -94,33 +97,32 @@ - - - + + cond_src['from_src'] == 'from_bigg' + - - - - + + - + - + + - - - + + +