Shed #16

	name: Shed

	on:
	schedule:
	- cron: '0 0 1 * *' # Run monthly

	jobs:

	list:
	runs-on: ubuntu-latest
	outputs:
	matrix: ${{ steps.set-matrix.outputs.matrix }}
	steps:
	- name: 'Checkout'
	uses: actions/checkout@v4
	- name: 'List repos'
	id: set-matrix
	run: echo "matrix=$(find tools -mindepth 1 -maxdepth 1 -type d \| jq -R -s -c 'split("\n")[:-1] \| map(split("/")[-1])')" >> "${GITHUB_OUTPUT}"

	shed:
	needs: list
	runs-on: ubuntu-latest
	continue-on-error: true
	strategy:
	max-parallel: 1
	matrix:
	repo: ${{ fromJson(needs.list.outputs.matrix) }}
	steps:
	- name: 'Checkout'
	uses: actions/checkout@v4
	- name: "Setup python"
	uses: actions/setup-python@v4
	with:
	python-version: '3.10'
	cache: 'pip' # caching pip dependencies
	cache-dependency-path: \|
	env/requirements.txt
	- name: 'Install packages'
	run: \|
	pip install -r env/requirements.txt
	- name: 'Test ToolShed'
	run: \|
	planemo shed_update --force_repository_creation --shed_target testtoolshed --shed_key "${{ secrets.TESTTOOLSHED }}" "tools/${{ matrix.repo }}" \|\| planemo shed_update --force_repository_creation --shed_target testtoolshed --shed_key "${{ secrets.TESTTOOLSHED }}" "tools/${{ matrix.repo }}"
	- name: 'Main ToolShed'
	run: \|
	planemo shed_update --force_repository_creation --shed_target toolshed --shed_key "${{ secrets.TOOLSHED }}" "tools/${{ matrix.repo }}" \|\| planemo shed_update --force_repository_creation --shed_target toolshed --shed_key "${{ secrets.TOOLSHED }}" "tools/${{ matrix.repo }}"

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