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allow custom placeholder for missing data in tsv_join task #227

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allow custom placeholder for missing data in tsv_join task, set default to "?" for tsv join of nextmeta-format input in sarscov2_nextstrain workflow

allow custom placeholder for missing data in tsv_join task, set default to "?" for tsv join of nextmeta-format input in sarscov2_nextstrain workflow
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Oh man... I didn't realize this was a thing. One suggested change, otherwise it's probably good.

Wouldn't hurt to test it a little bit--not necessarily as unit tests in viral-pipelines, but just to sanity check the behavior offline. Here are the inputs I was using before.. you could imagine a version of these with ?.

pipes/WDL/tasks/tasks_reports.wdl Outdated Show resolved Hide resolved
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