diff --git a/.dockstore.yml b/.dockstore.yml index 00d98dd64..7c238594c 100644 --- a/.dockstore.yml +++ b/.dockstore.yml @@ -244,6 +244,11 @@ workflows: primaryDescriptorPath: /pipes/WDL/workflows/multiqc_only.wdl testParameterFiles: - empty.json + - name: nextclade_single + subclass: WDL + primaryDescriptorPath: /pipes/WDL/workflows/nextclade_single.wdl + testParameterFiles: + - empty.json - name: sarscov2_batch_relineage subclass: WDL primaryDescriptorPath: /pipes/WDL/workflows/sarscov2_batch_relineage.wdl diff --git a/pipes/WDL/workflows/nextclade_single.wdl b/pipes/WDL/workflows/nextclade_single.wdl new file mode 100644 index 000000000..59b57539b --- /dev/null +++ b/pipes/WDL/workflows/nextclade_single.wdl @@ -0,0 +1,20 @@ +version 1.0 + +import "../tasks/tasks_nextstrain.wdl" as nextstrain + +workflow nextclade_single { + meta { + description: "Run Nextclade on a single genome" + } + + call nextstrain.nextclade_one_sample + + output { + String nextclade_clade = nextclade_one_sample.nextclade_clade + File nextclade_tsv = nextclade_one_sample.nextclade_tsv + File nextclade_json = nextclade_one_sample.nextclade_json + String nextclade_aa_subs = nextclade_one_sample.aa_subs_csv + String nextclade_aa_dels = nextclade_one_sample.aa_dels_csv + String nextclade_version = nextclade_one_sample.nextclade_version + } +}