diff --git a/docs/source/community/external-tools.md b/docs/source/community/external-tools.md index a9039e23..38312f93 100644 --- a/docs/source/community/external-tools.md +++ b/docs/source/community/external-tools.md @@ -42,7 +42,11 @@ BrainAtlas wraps the BrainGlobe Atlas API into a package for easy use with the U - [GitHub repository](https://github.com/VirtualBrainLab/BrainAtlas/) - [Documentation](https://virtualbrainlab.org/misc/brain_atlas.html) +## ClearFinder +ClearFinder is a graphical user interface that allows users without programming experience to use cellfinder and ClearMap for cell counting and reference atlas annotation of the whole volume of adult tissue-cleared mouse brains. Basic statistics and visualization round up the analysis. +- [GitHub repository](https://github.com/stegiopast/ClearFinder) +- [Preprint](https://www.biorxiv.org/content/10.1101/2024.06.21.599877v1) :::{hint} if you have developed any software using BrainGlobe tools, please [let us know](../contact) and we can advertise it here. -::: \ No newline at end of file +:::