From 0d40907f51a04b126f7b06ece777a96625cec111 Mon Sep 17 00:00:00 2001
From: Will Graham <32364977+willGraham01@users.noreply.github.com>
Date: Tue, 27 Feb 2024 14:04:16 +0000
Subject: [PATCH] `brainglobe-atlasapi` rename update (#48)

* Bump brainglobe-atlasapi rename and affected packages.
Include cellfinder bug fix in new version

* Drop python 3.8 support, add python 3.11 tests

* Bump brainrender

* Suppress 3.11 tests until cellfinder Keras update removes tensorflow
---
 pyproject.toml | 22 ++++++++++------------
 1 file changed, 10 insertions(+), 12 deletions(-)

diff --git a/pyproject.toml b/pyproject.toml
index 8d72a0f..adee20a 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -19,18 +19,17 @@ classifiers = [
 ]
 
 dependencies = [
-  "bg-atlasapi>=1.0.3,<2",
+  "brainglobe-atlasapi>=2.0.1,<3",
   "brainglobe-heatmap>=0.5.2,<1",
-  "brainglobe-napari-io>=0.3.3,<1",
-  "brainglobe-segmentation>=1.2.2,<2",
+  "brainglobe-napari-io>=0.3.4,<1",
+  "brainglobe-segmentation>=1.2.3,<2",
   "brainglobe-space>=1.0.0,<2",
-  "brainglobe-utils>=0.4.0,<1",
-  "brainreg[napari]>=1.0.5,<2",
-  "brainrender-napari>=0.0.2,<1",
-  "brainrender>=2.1.5,<3",
-  "cellfinder[napari]>=1.1.0,<2",
+  "brainglobe-utils>=0.4.1,<1",
+  "brainreg[napari]>=1.0.6,<2",
+  "brainrender-napari>=0.0.3,<1",
+  "brainrender>=2.1.6,<3",
+  "cellfinder[napari]>=1.1.1,<2",
   "napari[all]",
-  # bg-atlasgen [LOCAL ONLY],
   # brainglobe-napari [WIP],
 ]
 
@@ -70,7 +69,7 @@ exclude = ["tests*"]
 addopts = "--cov=brainglobe"
 
 [tool.black]
-target-version = ['py38', 'py39', 'py310']
+target-version = ['py39', 'py310']
 skip-string-normalization = false
 line-length = 79
 
@@ -94,12 +93,11 @@ fix = true
 [tool.tox]
 legacy_tox_ini = """
 [tox]
-envlist = py{38,39,310}
+envlist = py{39,310}
 isolated_build = True
 
 [gh-actions]
 python =
-    3.8: py38
     3.9: py39
     3.10: py310