Add print_stats method to ode and implement for CVODE integrator
#41
Workflow file for this run
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| name: Python package | |
| on: [push, pull_request] | |
| jobs: | |
| tests: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| include: | |
| #- python-version: "3.7" | |
| # sundials-version: "6.5.0" | |
| # tox-env: py37-test | |
| # sundials-precision: double | |
| # sundials-index-size: 64 | |
| - python-version: "3.8" | |
| sundials-version: "6.5.0" | |
| tox-env: py38-test | |
| sundials-precision: double | |
| sundials-index-size: 64 | |
| - python-version: "3.9" | |
| sundials-version: "6.5.0" | |
| tox-env: py39-test | |
| sundials-precision: double | |
| sundials-index-size: 64 | |
| - python-version: "3.10" | |
| sundials-version: "6.5.0" | |
| tox-env: py310-test | |
| sundials-precision: double | |
| sundials-index-size: 64 | |
| - python-version: "3.11" | |
| sundials-version: "6.5.0" | |
| tox-env: py311-test | |
| sundials-precision: double | |
| sundials-index-size: 64 | |
| - python-version: "3.12" | |
| sundials-version: "6.5.0" | |
| tox-env: py312-test | |
| sundials-precision: double | |
| sundials-index-size: 64 | |
| - python-version: "3.11" | |
| sundials-version: "6.5.0" | |
| tox-env: apidocs | |
| sundials-precision: double | |
| sundials-index-size: 64 | |
| - python-version: "3.11" | |
| sundials-version: "6.5.0" | |
| tox-env: docs | |
| sundials-precision: double | |
| sundials-index-size: 64 | |
| - python-version: "3.11" | |
| sundials-version: "6.5.0" | |
| tox-env: py311-test | |
| sundials-precision: double | |
| sundials-index-size: 32 | |
| #- python-version: "3.11" | |
| # sundials-version: "6.5.0" | |
| # tox-env: py311-test | |
| # sundials-precision: single | |
| # sundials-index-size: 64 | |
| - python-version: "3.11" | |
| sundials-version: "6.5.0" | |
| tox-env: py311-test | |
| sundials-precision: extended | |
| sundials-index-size: 64 | |
| #- python-version: "3.12" | |
| # sundials-version: "6.5.0" | |
| # tox-env: py312-notebooks | |
| # sundials-precision: double | |
| # sundials-index-size: 64 | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install build dependencies | |
| run: sudo apt-get install gfortran liblapack-dev | |
| - name: Sundials cache | |
| uses: actions/cache@v4 | |
| with: | |
| path: ~/sundials | |
| key: ${{ runner.os }}-sundials-${{ matrix.sundials-version }} | |
| restore-keys: | | |
| ${{ runner.os }}-sundials- | |
| - name: Install sundials | |
| run: | | |
| source ci_support/ensure_sundials_installed.sh && | |
| printf "export LD_LIBRARY_PATH=$LD_LIBRARY_PATH\n export LIBRARY_PATH=$LIBRARY_PATH\n export CPATH=$CPATH" > sundials_env.sh | |
| env: | |
| SUNDIALS_VERSION: ${{ matrix.sundials-version }} | |
| SUNDIALS_PRECISION: ${{ matrix.sundials-precision }} | |
| SUNDIALS_INDEX_SIZE: ${{ matrix.sundials-index-size }} | |
| - name: Get pip cache dir | |
| id: pip-cache | |
| run: | | |
| echo "::set-output name=dir::$(pip cache dir)" | |
| - name: pip cache | |
| uses: actions/cache@v4 | |
| with: | |
| path: ${{ steps.pip-cache.outputs.dir }} | |
| key: ${{ runner.os }}-pip-1 | |
| restore-keys: | | |
| ${{ runner.os }}-pip- | |
| - name: Install python dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| python -m pip install "setuptools<=64.0.0" | |
| python -m pip install --upgrade tox | |
| - name: Run tests | |
| run: | | |
| cat sundials_env.sh | |
| source sundials_env.sh && | |
| env | sort && | |
| tox | |
| env: | |
| TOXENV: ${{ matrix.tox-env }} | |
| UPLOAD_SCIKITS_ODES_API_DOCS: ${{ github.repository == 'bmcage/odes' && 'true' || 'false' }} | |
| GITHUB_ACTOR: ${{ secrets.GITHUB_ACTOR }} | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| API_DOCS_OUT_DIR: /tmp/new_sundials_docs |