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environment.yml
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environment.yml
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name: preprint
channels:
- bioconda
- conda-forge
- defaults
dependencies:
- anyio=3.6.2=pyhd8ed1ab_0
- appdirs=1.4.4=pyh9f0ad1d_0
- appnope=0.1.3=pyhd8ed1ab_0
- argon2-cffi=21.3.0=pyhd8ed1ab_0
- argon2-cffi-bindings=21.2.0=py310h90acd4f_3
- asttokens=2.1.0=pyhd8ed1ab_0
- attrs=22.1.0=pyh71513ae_1
- backcall=0.2.0=pyh9f0ad1d_0
- backports=1.0=py_2
- backports.functools_lru_cache=1.6.4=pyhd8ed1ab_0
- beautifulsoup4=4.11.1=pyha770c72_0
- bleach=5.0.1=pyhd8ed1ab_0
- brotli=1.0.9=hb7f2c08_8
- brotli-bin=1.0.9=hb7f2c08_8
- bzip2=1.0.8=h0d85af4_4
- ca-certificates=2022.9.24=h033912b_0
- certifi=2022.9.24=pyhd8ed1ab_0
- cffi=1.15.1=py310ha78151a_2
- cobra=0.26.0=pyhd8ed1ab_0
- commonmark=0.9.1=py_0
- contourpy=1.0.6=py310ha23aa8a_0
- cycler=0.11.0=pyhd8ed1ab_0
- dataclasses=0.8=pyhc8e2a94_3
- debugpy=1.6.3=py310h7a76584_1
- decorator=5.1.1=pyhd8ed1ab_0
- defusedxml=0.7.1=pyhd8ed1ab_0
- depinfo=1.7.0=pyhd8ed1ab_0
- diskcache=5.4.0=pyhd8ed1ab_0
- entrypoints=0.4=pyhd8ed1ab_0
- escher=1.7.3=py_0
- et_xmlfile=1.0.1=py_1001
- executing=1.2.0=pyhd8ed1ab_0
- flit-core=3.8.0=pyhd8ed1ab_0
- fonttools=4.38.0=py310h90acd4f_1
- freetype=2.12.1=h3f81eb7_0
- future=0.18.2=pyhd8ed1ab_6
- gf2x=1.3.0=hb2a7efb_2
- glpk=5.0=h3cb5acd_0
- gmp=6.2.1=h2e338ed_0
- gmpy2=2.1.2=py310hb691cb2_1
- h11=0.12.0=pyhd8ed1ab_0
- h2=4.1.0=pyhd8ed1ab_0
- hpack=4.0.0=pyh9f0ad1d_0
- httpcore=0.15.0=pyhd8ed1ab_0
- httpx=0.23.0=py310h2ec42d9_2
- hyperframe=6.0.1=pyhd8ed1ab_0
- idna=3.4=pyhd8ed1ab_0
- importlib-metadata=5.0.0=pyha770c72_1
- importlib_metadata=5.0.0=hd8ed1ab_1
- importlib_resources=5.10.0=pyhd8ed1ab_0
- ipykernel=6.17.1=pyh736e0ef_0
- ipython=8.6.0=pyhd1c38e8_1
- ipython_genutils=0.2.0=py_1
- ipywidgets=7.7.2=pyhd8ed1ab_0
- jedi=0.18.1=pyhd8ed1ab_2
- jinja2=2.11.3=pyhd8ed1ab_2
- jpeg=9e=hac89ed1_2
- jsonschema=3.2.0=pyhd8ed1ab_3
- jupyter_client=7.4.5=pyhd8ed1ab_0
- jupyter_core=5.0.0=py310h2ec42d9_0
- jupyter_server=1.23.1=pyhd8ed1ab_0
- jupyterlab_pygments=0.2.2=pyhd8ed1ab_0
- jupyterlab_widgets=1.1.1=pyhd8ed1ab_0
- kiwisolver=1.4.4=py310ha23aa8a_1
- lcms2=2.14=h90f4b2a_0
- lerc=4.0.0=hb486fe8_0
- libblas=3.9.0=16_osx64_openblas
- libbrotlicommon=1.0.9=hb7f2c08_8
- libbrotlidec=1.0.9=hb7f2c08_8
- libbrotlienc=1.0.9=hb7f2c08_8
- libcblas=3.9.0=16_osx64_openblas
- libcxx=14.0.6=hccf4f1f_0
- libdeflate=1.14=hb7f2c08_0
- libffi=3.4.2=h0d85af4_5
- libflint=2.9.0=hfd2f71f_ntl_100
- libgfortran=5.0.0=9_5_0_h97931a8_26
- libgfortran5=11.3.0=h082f757_26
- liblapack=3.9.0=16_osx64_openblas
- libopenblas=0.3.21=openmp_h429af6e_3
- libpng=1.6.38=ha978bb4_0
- libsodium=1.0.18=hbcb3906_1
- libsqlite=3.39.4=ha978bb4_0
- libtiff=4.4.0=hdb44e8a_4
- libwebp-base=1.2.4=h775f41a_0
- libxcb=1.13=h0d85af4_1004
- libzlib=1.2.13=hfd90126_4
- llvm-openmp=15.0.4=h61d9ccf_0
- markupsafe=2.0.1=py310he24745e_1
- matplotlib=3.6.2=py310h2ec42d9_0
- matplotlib-base=3.6.2=py310he725631_0
- matplotlib-inline=0.1.6=pyhd8ed1ab_0
- mistune=0.8.4=py310he24745e_1005
- mpc=1.2.1=hbb51d92_0
- mpfr=4.1.0=h0f52abe_1
- mpmath=1.2.1=pyhd8ed1ab_0
- munkres=1.1.4=pyh9f0ad1d_0
- nbclassic=0.4.8=pyhd8ed1ab_0
- nbclient=0.5.13=pyhd8ed1ab_0
- nbconvert=6.4.5=pyhd8ed1ab_2
- nbconvert-core=6.4.5=pyhd8ed1ab_2
- nbconvert-pandoc=6.4.5=pyhd8ed1ab_2
- nbformat=5.7.0=pyhd8ed1ab_0
- ncurses=6.3=h96cf925_1
- nest-asyncio=1.5.6=pyhd8ed1ab_0
- notebook=6.5.2=pyha770c72_1
- notebook-shim=0.2.2=pyhd8ed1ab_0
- ntl=11.4.3=h0ab3c2f_1
- numpy=1.23.4=py310h1b7c290_1
- openjpeg=2.5.0=h5d0d7b0_1
- openpyxl=3.0.10=py310h90acd4f_2
- openssl=3.0.7=hfd90126_0
- optlang=1.6.0=pyhd8ed1ab_0
- packaging=21.3=pyhd8ed1ab_0
- pandas=1.5.1=py310hecf8f37_1
- pandoc=2.19.2=h694c41f_1
- pandocfilters=1.5.0=pyhd8ed1ab_0
- parso=0.8.3=pyhd8ed1ab_0
- patsy=0.5.3=pyhd8ed1ab_0
- pexpect=4.8.0=pyh1a96a4e_2
- pickleshare=0.7.5=py_1003
- pillow=9.2.0=py310hffcf78b_3
- pip=22.3.1=pyhd8ed1ab_0
- platformdirs=2.5.2=pyhd8ed1ab_1
- plotly=5.11.0=pyhd8ed1ab_0
- prometheus_client=0.15.0=pyhd8ed1ab_0
- prompt-toolkit=3.0.32=pyha770c72_0
- psutil=5.9.4=py310h90acd4f_0
- pthread-stubs=0.4=hc929b4f_1001
- ptyprocess=0.7.0=pyhd3deb0d_0
- pure_eval=0.2.2=pyhd8ed1ab_0
- pycparser=2.21=pyhd8ed1ab_0
- pydantic=1.10.2=py310h90acd4f_1
- pygments=2.13.0=pyhd8ed1ab_0
- pyparsing=3.0.9=pyhd8ed1ab_0
- pyrsistent=0.19.2=py310h90acd4f_0
- python=3.10.6=hc14f532_0_cpython
- python-dateutil=2.8.2=pyhd8ed1ab_0
- python-fastjsonschema=2.16.2=pyhd8ed1ab_0
- python-libsbml=5.19.2=py310hba3363e_2
- python_abi=3.10=2_cp310
- pytz=2022.6=pyhd8ed1ab_0
- pyzmq=24.0.1=py310hf615a82_1
- readline=8.1.2=h3899abd_0
- rfc3986=1.5.0=pyhd8ed1ab_0
- rich=12.6.0=pyhd8ed1ab_0
- ruamel.yaml=0.17.21=py310h90acd4f_2
- ruamel.yaml.clib=0.2.7=py310h90acd4f_0
- scipy=1.9.3=py310h240c617_2
- seaborn=0.12.1=hd8ed1ab_0
- seaborn-base=0.12.1=pyhd8ed1ab_0
- send2trash=1.8.0=pyhd8ed1ab_0
- setuptools=65.5.1=pyhd8ed1ab_0
- six=1.16.0=pyh6c4a22f_0
- sniffio=1.3.0=pyhd8ed1ab_0
- soupsieve=2.3.2.post1=pyhd8ed1ab_0
- stack_data=0.6.0=pyhd8ed1ab_0
- statsmodels=0.13.5=py310h936d966_2
- swiglpk=5.0.8=py310h90acd4f_1
- symengine=0.9.0=h754f8cb_1
- sympy=1.11.1=py310h2ec42d9_2
- tenacity=8.1.0=pyhd8ed1ab_0
- terminado=0.17.0=pyhd1c38e8_0
- testpath=0.6.0=pyhd8ed1ab_0
- tk=8.6.12=h5dbffcc_0
- tornado=6.2=py310h90acd4f_1
- traitlets=5.5.0=pyhd8ed1ab_0
- typing-extensions=4.4.0=hd8ed1ab_0
- typing_extensions=4.4.0=pyha770c72_0
- tzdata=2022f=h191b570_0
- unicodedata2=15.0.0=py310h90acd4f_0
- venn=0.1.3=pyhd8ed1ab_0
- wcwidth=0.2.5=pyh9f0ad1d_2
- webencodings=0.5.1=py_1
- websocket-client=1.4.2=pyhd8ed1ab_0
- wheel=0.38.4=pyhd8ed1ab_0
- widgetsnbextension=3.6.1=pyha770c72_0
- xlsxwriter=3.0.3=pyhd8ed1ab_0
- xorg-libxau=1.0.9=h35c211d_0
- xorg-libxdmcp=1.1.3=h35c211d_0
- xz=5.2.6=h775f41a_0
- zeromq=4.3.4=he49afe7_1
- zipp=3.10.0=pyhd8ed1ab_0
- zstd=1.5.2=hfa58983_4
prefix: /Users/nilmat/miniconda3/envs/preprint