From 728bea0372e55ff97a6a4e8caa44c7299c1e83ab Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Lars=20Sch=C3=B6ning?= Date: Thu, 28 Jan 2016 12:11:53 +0100 Subject: [PATCH] docs: fix grammar table in README.rst --- README.rst | 48 ++++++++++++++++++++++++------------------------ 1 file changed, 24 insertions(+), 24 deletions(-) diff --git a/README.rst b/README.rst index 4c12de6..832529a 100644 --- a/README.rst +++ b/README.rst @@ -71,31 +71,31 @@ The grammar consists of a list of genotype or phenotype designations, separated spaces and/or commas. The designations are described using the following nomenclature: ============================================================= ================================== - Designation Grammar expression +Designation Grammar expression ============================================================= ================================== - ``feature`` deleted ``-feature`` - ``feature`` inserted ``+feature`` - ``feature`` inserted at ``site`` ``+site::feature`` - ``site`` replaced with ``feature`` ``site>feature`` - ``site`` (multiple integration) replaced with ``feature`` ``site>>feature`` - ``feature`` of ``organism`` ``organism/feature`` - ``feature`` with variant ``feature(variant)`` - ``feature`` with accession number ``feature#GB:123456`` - ``feature`` by accession number ``#GB:123456`` - fusion of ``feature1`` and ``feature2`` ``feature1:feature2`` - insertion of two fused features ``+feature1:feature2`` - insertion of a list of features or fusions ``+{..insertables}`` - phenotype: wild-type ``phene+`` or ``phene(wild-type)`` - phenotype: mutant ``phene-`` or ``phene(mutant)`` - selection marker: used (wild-type) ``marker+`` - selection marker: available (mutant) ``marker-`` - a non-integrated plasmid ``plasmid{}`` or ``plasmid{..insertables}`` - plasmid with selection marker ``plasmid{..insertables}::marker+`` - integrated plasmid vector with required insertion site ``site>vector{..insertables}`` - nucleotide range of a ``feature`` ``feature[startBase_endBase]`` - coding nucleotide range of a ``gene`` ``gene[c.startBase_endBase]`` - protein amino-acid range of a ``gene`` ``gene[p.startAA_endAA]`` - protein amino-acid of a ``gene`` ``gene[p.AA]`` +``feature`` deleted ``-feature`` +``feature`` inserted ``+feature`` +``feature`` inserted at ``site`` ``+site::feature`` +``site`` replaced with ``feature`` ``site>feature`` +``site`` (multiple integration) replaced with ``feature`` ``site>>feature`` +``feature`` of ``organism`` ``organism/feature`` +``feature`` with variant ``feature(variant)`` +``feature`` with accession number ``feature#GB:123456`` +``feature`` by accession number ``#GB:123456`` +fusion of ``feature1`` and ``feature2`` ``feature1:feature2`` +insertion of two fused features ``+feature1:feature2`` +insertion of a list of features or fusions ``+{..insertables}`` +phenotype: wild-type ``phene+`` or ``phene(wild-type)`` +phenotype: mutant ``phene-`` or ``phene(mutant)`` +selection marker: used (wild-type) ``marker+`` +selection marker: available (mutant) ``marker-`` +a non-integrated plasmid ``plasmid{}`` or ``plasmid{..insertables}`` +plasmid with selection marker ``plasmid{..insertables}::marker+`` +integrated plasmid vector with required insertion site ``site>vector{..insertables}`` +nucleotide range of a ``feature`` ``feature[startBase_endBase]`` +coding nucleotide range of a ``gene`` ``gene[c.startBase_endBase]`` +protein amino-acid range of a ``gene`` ``gene[p.startAA_endAA]`` +protein amino-acid of a ``gene`` ``gene[p.AA]`` ============================================================= ================================== Development