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docs: fix grammar table in README.rst
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lyschoening committed Jan 28, 2016
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Showing 1 changed file with 24 additions and 24 deletions.
48 changes: 24 additions & 24 deletions README.rst
Original file line number Diff line number Diff line change
Expand Up @@ -71,31 +71,31 @@ The grammar consists of a list of genotype or phenotype designations, separated
spaces and/or commas. The designations are described using the following nomenclature:

============================================================= ==================================
Designation Grammar expression
Designation Grammar expression
============================================================= ==================================
``feature`` deleted ``-feature``
``feature`` inserted ``+feature``
``feature`` inserted at ``site`` ``+site::feature``
``site`` replaced with ``feature`` ``site>feature``
``site`` (multiple integration) replaced with ``feature`` ``site>>feature``
``feature`` of ``organism`` ``organism/feature``
``feature`` with variant ``feature(variant)``
``feature`` with accession number ``feature#GB:123456``
``feature`` by accession number ``#GB:123456``
fusion of ``feature1`` and ``feature2`` ``feature1:feature2``
insertion of two fused features ``+feature1:feature2``
insertion of a list of features or fusions ``+{..insertables}``
phenotype: wild-type ``phene+`` or ``phene(wild-type)``
phenotype: mutant ``phene-`` or ``phene(mutant)``
selection marker: used (wild-type) ``marker+``
selection marker: available (mutant) ``marker-``
a non-integrated plasmid ``plasmid{}`` or ``plasmid{..insertables}``
plasmid with selection marker ``plasmid{..insertables}::marker+``
integrated plasmid vector with required insertion site ``site>vector{..insertables}``
nucleotide range of a ``feature`` ``feature[startBase_endBase]``
coding nucleotide range of a ``gene`` ``gene[c.startBase_endBase]``
protein amino-acid range of a ``gene`` ``gene[p.startAA_endAA]``
protein amino-acid of a ``gene`` ``gene[p.AA]``
``feature`` deleted ``-feature``
``feature`` inserted ``+feature``
``feature`` inserted at ``site`` ``+site::feature``
``site`` replaced with ``feature`` ``site>feature``
``site`` (multiple integration) replaced with ``feature`` ``site>>feature``
``feature`` of ``organism`` ``organism/feature``
``feature`` with variant ``feature(variant)``
``feature`` with accession number ``feature#GB:123456``
``feature`` by accession number ``#GB:123456``
fusion of ``feature1`` and ``feature2`` ``feature1:feature2``
insertion of two fused features ``+feature1:feature2``
insertion of a list of features or fusions ``+{..insertables}``
phenotype: wild-type ``phene+`` or ``phene(wild-type)``
phenotype: mutant ``phene-`` or ``phene(mutant)``
selection marker: used (wild-type) ``marker+``
selection marker: available (mutant) ``marker-``
a non-integrated plasmid ``plasmid{}`` or ``plasmid{..insertables}``
plasmid with selection marker ``plasmid{..insertables}::marker+``
integrated plasmid vector with required insertion site ``site>vector{..insertables}``
nucleotide range of a ``feature`` ``feature[startBase_endBase]``
coding nucleotide range of a ``gene`` ``gene[c.startBase_endBase]``
protein amino-acid range of a ``gene`` ``gene[p.startAA_endAA]``
protein amino-acid of a ``gene`` ``gene[p.AA]``
============================================================= ==================================

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