From faa8547d36def7f1a530887774165401b149cf08 Mon Sep 17 00:00:00 2001 From: Ben Gyori Date: Fri, 25 Oct 2024 14:01:13 -0400 Subject: [PATCH] Add part_of for discovered families --- src/bioregistry/data/bioregistry.json | 137 +++++++++++++++++++++----- 1 file changed, 112 insertions(+), 25 deletions(-) diff --git a/src/bioregistry/data/bioregistry.json b/src/bioregistry/data/bioregistry.json index 22811382e..7535c54b1 100644 --- a/src/bioregistry/data/bioregistry.json +++ b/src/bioregistry/data/bioregistry.json @@ -3205,7 +3205,8 @@ "pattern": "^\\d+$", "prefix": "aop.events", "uri_format": "https://aopwiki.org/events/$1" - } + }, + "part_of": "aop" }, "aop.relationships": { "biocontext": { @@ -3237,7 +3238,8 @@ "pattern": "^\\d+$", "prefix": "aop.relationships", "uri_format": "https://aopwiki.org/relationships/$1" - } + }, + "part_of": "aop" }, "aop.stressor": { "biocontext": { @@ -3269,7 +3271,8 @@ "pattern": "^\\d+$", "prefix": "aop.stressor", "uri_format": "https://aopwiki.org/stressors/$1" - } + }, + "part_of": "aop" }, "apaonto": { "aberowl": { @@ -4608,7 +4611,8 @@ "pattern": "^[AEP]-\\w{4}-\\d+$", "prefix": "arrayexpress.platform", "uri_format": "https://www.ebi.ac.uk/arrayexpress/arrays/$1" - } + }, + "part_of": "arrayexpress" }, "arraymap": { "biocontext": { @@ -9523,6 +9527,7 @@ "registry" ], "name": "Bioregistry Collections", + "part_of": "bioregistry", "pattern": "^\\d{7}$", "uri_format": "https://bioregistry.io/collection/$1" }, @@ -9549,6 +9554,7 @@ "registry" ], "name": "Bioregistry Metaregistry", + "part_of": "bioregistry", "uri_format": "https://bioregistry.io/metaregistry/$1" }, "bioregistry.schema": { @@ -9571,6 +9577,7 @@ "registry" ], "name": "Bioregistry Schema", + "part_of": "bioregistry", "pattern": "^\\d{7}$", "uri_format": "https://bioregistry.io/schema/#$1" }, @@ -10621,6 +10628,7 @@ "spectrometry" ], "name": "NMR Restraints Grid", + "part_of": "bmrb", "pattern": "^\\d+$", "uri_format": "https://restraintsgrid.bmrb.io/NRG/MRGridServlet?block_text_type=2-parsed&db_username=wattos1&file_detail=2-parsed&format=n%2Fa&program=STAR&request_type=block&subtype=full&type=entry&mrblock_id=$1" }, @@ -10983,6 +10991,7 @@ "structrual bioinformatics" ], "name": "BRENDA Ligand", + "part_of": "brenda", "pattern": "^\\d+$", "uri_format": "https://www.brenda-enzymes.de/ligand.php?brenda_ligand_id=$1" }, @@ -11002,6 +11011,7 @@ "structrual bioinformatics" ], "name": "BRENDA Ligand Group", + "part_of": "brenda", "pattern": "^\\d+$", "uri_format": "https://www.brenda-enzymes.de/ligand.php?brenda_group_id=$1" }, @@ -12610,7 +12620,8 @@ "pattern": "^\\w+$", "prefix": "cath.domain", "uri_format": "http://www.cathdb.info/domain/$1" - } + }, + "part_of": "cath" }, "cath.superfamily": { "biocontext": { @@ -14218,6 +14229,7 @@ "registry" ], "name": "Cellosaurus Registry", + "part_of": "cellosaurus", "uri_format": "https://bioregistry.io/metaregistry/cellosaurus/$1" }, "cellrepo": { @@ -17785,7 +17797,8 @@ "pattern": "^SCV\\d+(\\.\\d+)?$", "prefix": "clinvar.submission", "uri_format": "http://www.ncbi.nlm.nih.gov/clinvar?term=$1" - } + }, + "part_of": "clinvar" }, "clinvar.submitter": { "mappings": { @@ -17802,7 +17815,8 @@ "prefix": "clinvar.submitter", "sampleId": "26957", "uri_format": "https://www.ncbi.nlm.nih.gov/clinvar/submitters/$1" - } + }, + "part_of": "clinvar" }, "clo": { "aberowl": { @@ -20851,6 +20865,7 @@ "wikidata": "P3088" }, "name": "Catalogue of Life in Taiwan", + "part_of": "col", "pattern": "^[1-9]\\d{5}$", "reviewer": { "email": "cthoyt@gmail.com", @@ -21875,6 +21890,7 @@ "cellosaurus": "Cosmic-CLP" }, "name": "COSMIC Cell Lines", + "part_of": "cosmic", "pattern": "^\\d+$", "uri_format": "https://cancer.sanger.ac.uk/cell_lines/sample/overview?id=$1" }, @@ -22996,6 +23012,7 @@ "prefix": "cst.ab", "uri_format": "http://www.cellsignal.com/products/$1.html" }, + "part_of": "cst", "prefixcommons": { "description": "A small pathway portal for showcasing Cell Signaling Technology phospho-antibody products. Contains pathway diagrams that are clickable and link to more information about each protein and the commercial products that are available for that protein.", "example": "3762", @@ -23897,7 +23914,8 @@ "pattern": "^(hsa-(let|mir)-\\w+(-\\w+)?)|(piR-\\d+)|(chr\\w+.tRNA\\d+-\\w+)|(chr\\w+.tRNA\\d+-\\w+-tRF\\d)|((SNORD|SNORA|ACA|HBII|HBI|U)(-)?\\w+)|(HY\\d\\+(-L\\d+)?)|((LSU|SSU|5S)(-rRNA_Hsa)?(-L\\d+)?)$", "prefix": "dashr.expression", "uri_format": "https://dashr1.lisanwanglab.org/entry/hsa-mir-200a#$1#exprPerTissueTable" - } + }, + "part_of": "dashr" }, "datacite": { "aberowl": { @@ -29345,6 +29363,7 @@ "example": "DBCOND0066902", "homepage": "https://go.drugbank.com", "name": "DrugBank Condition", + "part_of": "drugbank", "pattern": "^DBCOND\\d+$", "uri_format": "https://go.drugbank.com/indications/$1" }, @@ -29359,6 +29378,7 @@ "example": "DBMET02292", "homepage": "https://go.drugbank.com", "name": "DrugBank Metabolite", + "part_of": "drugbank", "pattern": "^DBMET\\d+$", "uri_format": "https://go.drugbank.com/metabolites/$1" }, @@ -29373,6 +29393,7 @@ "example": "1537", "homepage": "https://go.drugbank.com", "name": "DrugBank Reaction", + "part_of": "drugbank", "pattern": "^\\d+$", "uri_format": "https://go.drugbank.com/reactions/$1" }, @@ -33165,6 +33186,7 @@ ], "homepage": "https://www.iucr.org/resources/cif", "name": "Crystallographic Information Framework", + "part_of": "emmo", "repository": "https://github.com/emmo-repo/CIF-ontology", "uri_format": "http://emmo.info/emmo/cif-core#$1" }, @@ -35048,6 +35070,7 @@ "prefix": "ensembl.metazoa", "uri_format": "https://metazoa.ensembl.org/id/$1" }, + "part_of": "ensembl", "prefixcommons": { "description": "Ensembl Genomes consists of five sub-portals (for bacteria, protists, fungi, plants and invertebrate metazoa) designed to complement the availability of vertebrate genomes in Ensembl. This collection is concerned with bacterial genomes.", "example": "AGAP006864", @@ -35138,6 +35161,7 @@ "prefix": "ensembl.plant", "uri_format": "https://plants.ensembl.org/id/$1" }, + "part_of": "ensembl", "prefixcommons": { "description": "Ensembl Genomes consists of five sub-portals (for bacteria, protists, fungi, plants and invertebrate metazoa) designed to complement the availability of vertebrate genomes in Ensembl. This collection is concerned with bacterial genomes.", "example": "LOC_Os12g44300", @@ -35186,6 +35210,7 @@ "prefix": "ensembl.protist", "uri_format": "https://protists.ensembl.org/id/$1" }, + "part_of": "ensembl", "prefixcommons": { "description": "Ensembl Genomes consists of five sub-portals (for bacteria, protists, fungi, plants and invertebrate metazoa) designed to complement the availability of vertebrate genomes in Ensembl. This collection is concerned with bacterial genomes.", "example": "PFC0120w", @@ -37671,6 +37696,7 @@ "github_request_issue": 872, "homepage": "https://www.fao.org/fishery/en/collection/asfis/en", "name": "Aquatic Sciences and Fisheries Information System", + "part_of": "fao", "pattern": "^\\d+$", "repository": "bioregistry", "reviewer": { @@ -42951,6 +42977,7 @@ "mappings": { "prefixcommons": "geneannot" }, + "part_of": "genecards", "prefixcommons": { "description": "GeneAnnot provides a revised and improved annotation of Affymetrix probe-sets from HG-U95, HG-U133 and HG-U133 Plus2.0. Probe-sets are related to GeneCards genes, by direct sequence comparison of probes to GenBank, RefSeq and Ensembl mRNA sequences, while assigning sensitivity and specificity scores to each probe-set to gene match.", "example": "GSTA1", @@ -42967,6 +42994,7 @@ "mappings": { "prefixcommons": "geneloc" }, + "part_of": "genecards", "prefixcommons": { "description": "GeneLoc presents an integrated map for each human chromosome, based on data integrated by the GeneLoc algorithm. GeneLoc includes further links to GeneCards, NCBI's Human Genome Sequencing, UniGene, and mapping resources", "example": "17503", @@ -42990,6 +43018,7 @@ "mappings": { "prefixcommons": "genenote" }, + "part_of": "genecards", "prefixcommons": { "description": "GeneNote is a database of human genes and their expression profiles in healthy tissues. It is based on Weizmann Institute of Science DNA array experiments, which were performed on the Affymetrix HG-U95 set A-E.", "example": "GC06M052656", @@ -44077,6 +44106,7 @@ "example": "ADM1", "homepage": "https://www.geonames.org/export/codes.html", "name": "GeoNames Feature Code", + "part_of": "geonames", "uri_format": "https://www.geonames.org/recent-changes/featurecode/$1/" }, "gexo": { @@ -44428,6 +44458,7 @@ "version control" ], "name": "GitHub Issue", + "part_of": "github", "uri_format": "https://bioregistry.io/resolve/github/issue/$1" }, "github.pull": { @@ -44447,6 +44478,7 @@ "version control" ], "name": "GitHub Pull Request", + "part_of": "github", "uri_format": "https://bioregistry.io/resolve/github/pull/$1" }, "gitlab": { @@ -45179,7 +45211,8 @@ "pattern": "^([0-9a-fA-F]){8}(-([0-9a-fA-F]){4}){3}-([0-9a-fA-F]){12}$", "prefix": "gmd.analyte", "uri_format": "http://gmd.mpimp-golm.mpg.de/Analytes/$1" - } + }, + "part_of": "gmd" }, "gmd.gcms": { "biocontext": { @@ -45211,7 +45244,8 @@ "pattern": "^([0-9a-fA-F]){8}(-([0-9a-fA-F]){4}){3}-([0-9a-fA-F]){12}$", "prefix": "gmd.gcms", "uri_format": "http://gmd.mpimp-golm.mpg.de/Spectrums/$1" - } + }, + "part_of": "gmd" }, "gmd.profile": { "biocontext": { @@ -45243,7 +45277,8 @@ "pattern": "^([0-9a-fA-F]){8}(-([0-9a-fA-F]){4}){3}-([0-9a-fA-F]){12}$", "prefix": "gmd.profile", "uri_format": "http://gmd.mpimp-golm.mpg.de/profile/default.aspx?XemlId=$1" - } + }, + "part_of": "gmd" }, "gmd.ref": { "biocontext": { @@ -45275,7 +45310,8 @@ "pattern": "^([0-9a-fA-F]){8}(-([0-9a-fA-F]){4}){3}-([0-9a-fA-F]){12}$", "prefix": "gmd.ref", "uri_format": "http://gmd.mpimp-golm.mpg.de/ReferenceSubstances/$1" - } + }, + "part_of": "gmd" }, "gmelin": { "contributor": { @@ -46222,6 +46258,7 @@ "biolink": "gpi" }, "name": "Gene Product Information Schema", + "part_of": "go", "uri_format": "http://geneontology.org/docs/gene-product-information-gpi-format/#$1" }, "go.model": { @@ -46237,6 +46274,7 @@ "go": "gomodel" }, "name": "Gene Ontology Causal Assembly Model", + "part_of": "go", "uri_format": "http://noctua.geneontology.org/editor/graph/gomodel:$1" }, "go.ref": { @@ -46278,6 +46316,7 @@ "prefix": "go.ref", "uri_format": "http://www.geneontology.org/cgi-bin/references.cgi#$1" }, + "part_of": "go", "pattern": "^\\d{7}$", "uri_format": "https://github.com/geneontology/go-site/blob/master/metadata/gorefs/README.md#goref$1" }, @@ -46292,6 +46331,7 @@ "example": "CHEBI", "homepage": "http://geneontology.org/", "name": "Gene Ontology Registry", + "part_of": "go", "uri_format": "https://bioregistry.io/metaregistry/go/$1" }, "go.rule": { @@ -46676,7 +46716,8 @@ "pattern": "^[Gi|Gc]\\d+$", "prefix": "gold.genome", "uri_format": "http://www.genomesonline.org/cgi-bin/GOLD/GOLDCards.cgi?goldstamp=$1" - } + }, + "part_of": "gold" }, "gold.meta": { "biocontext": { @@ -46709,7 +46750,8 @@ "pattern": "^Gm\\d+$", "prefix": "gold.meta", "uri_format": "http://genomesonline.org/cgi-bin/GOLD/bin/GOLDCards.cgi?goldstamp=$1" - } + }, + "part_of": "gold" }, "goldbook": { "bartoc": { @@ -47787,6 +47829,7 @@ "name": "Germplasm Resources Information Network", "prefix": "GRIN" }, + "part_of": "grin", "wikidata": { "database": "Q19576476", "description": "URL for a taxon in the GRIN website", @@ -49592,6 +49635,7 @@ "prefix": "hgnc.genefamily", "uri_format": "https://www.genenames.org/cgi-bin/genefamilies/set/$1" }, + "part_of": "hgnc", "synonyms": [ "GFAM", "HGNC_GROUP", @@ -49613,7 +49657,8 @@ "prefix": "hgnc.genegroup", "sampleId": "141", "uri_format": "https://www.genenames.org/data/genegroup/#!/group/$1" - } + }, + "part_of": "hgnc" }, "hgnc.symbol": { "biocontext": { @@ -49648,6 +49693,7 @@ "prefix": "hgnc.symbol", "uri_format": "https://www.genenames.org/cgi-bin/gene_symbol_report?match=$1" }, + "part_of": "hgnc", "providers": [ { "code": "g2p", @@ -56655,7 +56701,8 @@ "pattern": "^([A-Z]\\d{5}|[A-Z]{2}\\d{6}|[A-Z]{4}\\d{8}|[A-J][A-Z]{2}\\d{5})(\\.\\d+)?$", "prefix": "insdc.cds", "uri_format": "https://www.ncbi.nlm.nih.gov/protein/$1" - } + }, + "part_of": "insdc" }, "insdc.gca": { "biocontext": { @@ -56697,7 +56744,8 @@ "pattern": "^GCA_[0-9]{9}\\.[0-9]$", "prefix": "insdc.gca", "uri_format": "https://www.ncbi.nlm.nih.gov/assembly/$1" - } + }, + "part_of": "insdc" }, "insdc.gcf": { "has_canonical": "ncbi.assembly", @@ -56716,6 +56764,7 @@ "sampleId": "GCF_000001405", "uri_format": "https://www.ncbi.nlm.nih.gov/datasets/genome/$1" }, + "part_of": "insdc", "synonyms": [ "insdc.gcf" ] @@ -56733,6 +56782,7 @@ "github_request_issue": 131, "homepage": "https://www.insdc.org/", "name": "International Nucleotide Sequence Database Collaboration (INSDC) Run", + "part_of": "insdc", "pattern": "^(E|D|S)RR[0-9]{6,}$", "reviewer": { "email": "cthoyt@gmail.com", @@ -56828,6 +56878,7 @@ "prefix": "insdc.sra", "uri_format": "https://www.ncbi.nlm.nih.gov/sra/$1" }, + "part_of": "insdc", "publications": [ { "doi": "10.1186/s13742-015-0064-7", @@ -57129,6 +57180,7 @@ "prefix": "intact.molecule", "uri_format": "https://www.ebi.ac.uk/intact/molecule/$1" }, + "part_of": "intact", "uri_format": "https://www.ebi.ac.uk/intact/search?query=$1" }, "integbio": { @@ -64006,7 +64058,8 @@ "prefix": "matrixdb.association", "uri_format": "http://matrixdb.univ-lyon1.fr//cgi-bin/current/newPort?type=association&value=$1&class=Association" }, - "name": "MatrixDB Association" + "name": "MatrixDB Association", + "part_of": "matrixdb" }, "mavedb": { "comment": "This is an interesting one as the full IDs as they appear on the page are of the form `urn:mavedb:00000011-a` suggesting this is the preferred URI expansion for identification purposes. However, mavedb hasn't been registered with IANA https://www.iana.org/assignments/urn-namespaces/urn-namespaces.xhtml", @@ -65513,6 +65566,7 @@ "prefix": "mesh.2012", "uri_format": "http://www.nlm.nih.gov/cgi/mesh/2012/MB_cgi?mode=&index=$1&view=expanded" }, + "part_of": "mesh", "provides": "mesh" }, "mesh.2013": { @@ -65546,6 +65600,7 @@ "prefix": "mesh.2013", "uri_format": "http://www.nlm.nih.gov/cgi/mesh/2013/MB_cgi?mode=&index=$1&view=expanded" }, + "part_of": "mesh", "provides": "mesh" }, "mesh.vocab": { @@ -67936,7 +67991,8 @@ "prefix": "minid.test", "sampleId": "3SBPLMKKVEVR", "uri_format": "https://hdl.handle.net/hdl:20.500.12633/$1" - } + }, + "part_of": "minid" }, "mint": { "banana": "MINT", @@ -68471,6 +68527,7 @@ "example": "MIPF0000002", "homepage": "http://www.mirbase.org/", "name": "miRBase Families", + "part_of": "mirbase", "synonyms": [ "MIRBASE_FAMILY" ], @@ -68515,6 +68572,7 @@ "uri_format": "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=$1" }, "name": "miRBase mature miRNA", + "part_of": "mirbase", "prefixcommons": { "description": "The miRBase Sequence Database is a searchable database of published miRNA sequences and annotation. This collection refers specifically to the mature miRNA sequence.", "example": "MIMAT0000001", @@ -70575,7 +70633,8 @@ "prefix": "modeldb.concept", "sampleId": "3639", "uri_format": "https://senselab.med.yale.edu/ModelDB/ModelList?id=$1" - } + }, + "part_of": "modeldb" }, "moid": { "mappings": { @@ -70638,6 +70697,7 @@ "example": "1868", "homepage": "https://winter.group.shef.ac.uk/molbase/", "name": "MolBase", + "part_of": "molbase", "pattern": "^\\d+$" }, "molmedb": { @@ -75809,6 +75869,7 @@ "example": "01406", "homepage": "https://www.nextprot.org/", "name": "neXtProt family", + "part_of": "nextprot", "pattern": "^\\d+$", "synonyms": [ "NXPFA" @@ -76334,6 +76395,7 @@ "mappings": { "wikidata": "P1645" }, + "part_of": "nist", "wikidata": { "description": "identifier for a physical constant", "example": [ @@ -77247,6 +77309,7 @@ "mappings": { "wikidata": "P11931" }, + "part_of": "noaa", "wikidata": { "database": "http://www.wikidata.org/.well-known/genid/4a2681f823464601994d25a19df58aae", "description": "chemical in the database supplied by National Oceanic and Atmospheric Administration", @@ -80658,6 +80721,7 @@ "integbio": "nbdc00153" }, "name": "OMIA variants", + "part_of": "omia", "pattern": "^\\d+$", "publications": [ { @@ -83216,6 +83280,7 @@ "version": "4.5", "version.iri": "https://www.orphadata.com/data/ontologies/ordo/last_version/ORDO_en_4.5.owl" }, + "part_of": "orphanet", "pattern": "^C?\\d+$", "publications": [ { @@ -86177,6 +86242,7 @@ "uri_format": "http://www.rcsb.org/pdb/ligand/ligandsummary.do?hetId=$1" }, "name": "PDB ligand", + "part_of": "pdb", "pathguide": { "abbreviation": "PDB-Ligand", "homepage": "http://www.idrtech.com/PDB-Ligand/", @@ -87066,7 +87132,8 @@ "pattern": "^PASS\\d{5}$", "prefix": "peptideatlas.dataset", "uri_format": "http://www.peptideatlas.org/PASS/$1" - } + }, + "part_of": "peptideatlas" }, "perkinelmer": { "cellosaurus": { @@ -87619,6 +87686,7 @@ "edam": "2758" }, "name": "Pfam Clans", + "part_of": "pfam", "pattern": "^CL\\d+$", "providers": [ { @@ -90542,7 +90610,8 @@ "prefix": "pmr.workspace", "sampleId": "modularmassactionprimer", "uri_format": "https://models.physiomeproject.org/workspace/$1" - } + }, + "part_of": "pmr" }, "po": { "aberowl": { @@ -92269,7 +92338,8 @@ "pattern": "^P(X|R)D\\d{6}$", "prefix": "pride.project", "uri_format": "https://www.ebi.ac.uk/pride/archive/projects/$1" - } + }, + "part_of": "pride" }, "prints": { "biocontext": { @@ -97842,6 +97912,7 @@ "prefix": "rgd.qtl", "uri_format": "http://rgd.mcw.edu/rgdweb/report/qtl/main.html?id=$1" }, + "part_of": "rgd", "twitter": "ratgenome" }, "rgd.strain": { @@ -97875,6 +97946,7 @@ "prefix": "rgd.strain", "uri_format": "http://rgd.mcw.edu/rgdweb/report/strain/main.html?id=$1" }, + "part_of": "rgd", "twitter": "ratgenome" }, "rhea": { @@ -101376,6 +101448,7 @@ "edam": "1041" }, "name": "SCOP(e) concise classification string", + "part_of": "scop", "references": [ "https://scop.berkeley.edu/help/#stableidentifiers" ], @@ -101411,6 +101484,7 @@ "edam": "1039" }, "name": "Structural Classification of Protein - Stable Domain Identifier", + "part_of": "scop", "references": [ "https://scop.berkeley.edu/help/#stableidentifiers" ], @@ -101474,6 +101548,7 @@ "mappings": { "wikidata": "P1155" }, + "part_of": "scopus", "wikidata": { "description": "identifier for an organisation in author affiliations per Scopus", "example": [ @@ -101492,6 +101567,7 @@ "wikidata": "P1156" }, "name": "Scopus Publication", + "part_of": "scopus", "wikidata": { "description": "identifier for a source/publication venue (journal, conference, etc) in Scopus", "example": [ @@ -101511,6 +101587,7 @@ "wikidata": "P1154" }, "name": "Scopus Work", + "part_of": "scopus", "synonyms": [ "scopus.eid" ], @@ -102040,7 +102117,8 @@ "pattern": "^cpd\\d+$", "prefix": "seed.compound", "uri_format": "http://modelseed.org/biochem/compounds/$1" - } + }, + "part_of": "seed" }, "seed.reaction": { "biolink": { @@ -102075,7 +102153,8 @@ "pattern": "^rxn\\d+$", "prefix": "seed.reaction", "uri_format": "http://modelseed.org/biochem/reactions/$1" - } + }, + "part_of": "seed" }, "seinet": { "contributor": { @@ -103185,6 +103264,7 @@ "prefix": "sgd.pathways", "uri_format": "http://pathway.yeastgenome.org/YEAST/new-image?type=PATHWAY&object=$1" }, + "part_of": "sgd", "prefixcommons": { "description": "Curated biochemical pathways for Saccharomyces cerevisiae at Saccharomyces genome database (SGD).", "example": "PWY3O-214", @@ -113043,6 +113123,7 @@ "example": "A0118748", "homepage": "https://www.nlm.nih.gov/research/umls", "name": "Unified Medical Language System Atomic Unique Identifier", + "part_of": "umls", "pattern": "^A\\d+$", "synonyms": [ "UMLS_ICD9CM_2005_AUI" @@ -113788,6 +113869,7 @@ "go": "ARBA" }, "name": "Association-Rule-Based Annotator", + "part_of": "uniprot", "pattern": "^ARBA\\d+$", "reviewer": { "email": "cthoyt@gmail.com", @@ -113843,6 +113925,7 @@ "mappings": { "lov": "uniprot" }, + "part_of": "uniprot", "uri_format": "http://purl.uniprot.org/core/$1" }, "uniprot.disease": { @@ -113968,6 +114051,7 @@ "wikidata": "P4616" }, "name": "UniProt journal", + "part_of": "uniprot", "wikidata": { "description": "identifier for a scientific journal, in the UniProt database", "example": [ @@ -114074,6 +114158,7 @@ "togoid": "UniprotMnemonic" }, "name": "UniProt", + "part_of": "uniprot", "pattern": "^[A-Z0-9]{1,10}_[A-Z0-9]{1,5}$", "publications": [ { @@ -118853,6 +118938,7 @@ }, "mastodon": "wikipathways@fosstodon.org", "name": "WikiPathways Ontology", + "part_of": "wikipathways", "references": [ "https://github.com/biopragmatics/bioregistry/issues/818" ], @@ -119687,6 +119773,7 @@ "mappings": { "wikidata": "P1053" }, + "part_of": "wos", "wikidata": { "description": "identifier for a researcher in a system for scientific authors, redirects to a Web of Science ID, along with P3829", "example": [