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SILVA #1306
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Thanks @jplfaria. I made a few updates, including putting @frankolivergloeckner as the contact person - it's Bioregistry policy to have a single point of contact and not a group email. |
@jplfaria however, it's not clear what's the actual semantic space here. The URI format doesn't seem to work when using your example. Can you link me to a page that shows something for the example acccession number |
Is it possible that https://www.arb-silva.de/browser/ssu-138.2/AJ001010 is actually the accession numbers that SILVA creates, and 11084 was an NCBI Taxonomy id? |
I was going off the folder I believe it has taxonomy data: |
here are a few lines in that file, I think it corresponds to https://www.arb-silva.de/browser/ssu-121/AB050229/ but I can't figure out where any of the numbers (42950, 42951, 42952) are on the web page. Or, what does AB050229 mean? |
We are bpth having issues understanding what is going on here. Maybe starting this entry could have been more timely. I will spend more time trying to understand the resource to be able to properly represent this entry. |
Prefix
silva
Name
SILVA rRNA database project
Homepage
https://www.arb-silva.de/
Source Code Repository
No response
Description
SILVA is a comprehensive, quality-checked, and regularly updated resource of aligned ribosomal RNA (rRNA) gene sequences for Bacteria, Archaea, and Eukaryotes. It provides a consistent taxonomic framework, commonly used in microbial ecology and diversity studies.
License
CC-BY-SA-4.0
Publications
doi:10.1093/nar/gks1219 | doi:10.1093/nar/gkt1209
Example Local Unique Identifier
11084
Regular Expression Pattern for Local Unique Identifier
^\d+$
URI Format String
https://www.arb-silva.de/search?q=$1
Wikidata Property
No response
Contributor Name
Jose P. Faria
Contributor GitHub
jplfaria
Contributor ORCiD
0000-0001-9302-7250
Contributor Email
[email protected]
Contact Name
Frank Oliver Glöckner
Contact ORCiD
0000-0001-8528-9023
Contact GitHub
frankolivergloeckner
Contact Email
[email protected]
Additional Comments
No response
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