Welcome to the course website for CMM262: Quantitative Methods in Genetics and Genomics!
This interactive course is taught by a variety of experts in the field of genetics and genomics! These experts will go over the conceptual background behing different sequencing technologies and/or analytical techniques, as well as provide an interactive introduction to performing bioinformatics analyses in the form of Jupyter Notebooks.
You can find the Course Syllabus at the following location: https://github.com/biom262/cmm262-2021/blob/main/CMM262-Syllabus-2021.ipynb
| Week | Starting Date | Topic | Lecturer(s) | Links | Homework |
|---|---|---|---|---|---|
| 1 | January 4, 2021 | Module 1: Programming Basics in Python, UNIX, and R | TAs | Module 1 | None |
| 2 | January 11, 2021 | Module 2: Introduction to Statistics | TAs | Module 2 | None |
| 3 | January 20, 2021 | Module 3: RNA-Sequencing (RNA-seq) | TAs Pablo Tamayo William Kim |
Module 3 | Homework 1 |
| 4 | January 25, 2021 | Module 4: Single-Cell RNA-Sequencing (scRNA-seq) | Robert Morey | Module 4 | None |
| 4 | January 29, 2021 | Module 5: Spatial Transcriptomics | Noorsher Ahmed | Module 5 | None |
| 5 | February 1, 2021 | Content Review Week | TAs | Midterm Review | Midterm |
| 6 | February 8, 2021 | Module 6: Chromatin and ChIP-Sequencing (ChIP-seq) | Alon Goren | Module 6 | None |
| 7 | February 17, 2021 | Module 7: Network Biology | Hannah Carter | Module 7 | Homework 2 |
| 8 | February 22, 2021 | Module 8: Genome-Wide Association Studies (GWAS) | Graham McVicker | Module 8 | Homework 3 |
| 9 | March 1, 2021 | Module 9: Variant Calling | Olivier Harismendy | Module 9 | None |
| 10 | March 8, 2021 | Module 10: Population Genetics | Nicholas Schork Ondrej Libiger |
Module 10 | None |
| - | March 15, 2021 | Finals Week | - | TBA | Take-Home Final |