From d16be51f5d0392ffc7219deeedc0c7dea7d5fd4c Mon Sep 17 00:00:00 2001
From: Ashley Sawle <Ashley.Sawle@cruk.cam.ac.uk>
Date: Tue, 12 Sep 2023 12:42:55 +0100
Subject: [PATCH] Add janitor to package list

---
 Precourse_Instructions.Rmd  | 3 ++-
 Precourse_Instructions.html | 3 ++-
 2 files changed, 4 insertions(+), 2 deletions(-)

diff --git a/Precourse_Instructions.Rmd b/Precourse_Instructions.Rmd
index df06830..e062367 100644
--- a/Precourse_Instructions.Rmd
+++ b/Precourse_Instructions.Rmd
@@ -206,7 +206,7 @@ out whether to use CRAN or Bioconductor for each package.
 BiocManager::install(c("AnnotationDbi", "AnnotationHub", "circlize",
                        "clusterProfiler", "ComplexHeatmap", "DESeq2",
                        "enrichplot", "ensembldb", "gganimate", "ggdendro",
-                       "ggfortify", "ggrepel", "ggvenn", "msigdbr",
+                       "ggfortify", "ggrepel", "ggvenn", "janitor", "msigdbr",
                        "org.Mm.eg.db", "pathview", "tximport")) 
 ```
 
@@ -229,6 +229,7 @@ library(ggdendro)
 library(ggfortify)
 library(ggrepel)
 library(ggvenn)
+library(janitor)
 library(msigdbr)
 library(org.Mm.eg.db)
 library(pathview)
diff --git a/Precourse_Instructions.html b/Precourse_Instructions.html
index ec201f9..6735823 100644
--- a/Precourse_Instructions.html
+++ b/Precourse_Instructions.html
@@ -302,7 +302,7 @@ <h2><span class="header-section-number">3.2</span> Install Packages</h2>
 <pre class="r"><code>BiocManager::install(c(&quot;AnnotationDbi&quot;, &quot;AnnotationHub&quot;, &quot;circlize&quot;,
                        &quot;clusterProfiler&quot;, &quot;ComplexHeatmap&quot;, &quot;DESeq2&quot;,
                        &quot;enrichplot&quot;, &quot;ensembldb&quot;, &quot;gganimate&quot;, &quot;ggdendro&quot;,
-                       &quot;ggfortify&quot;, &quot;ggrepel&quot;, &quot;ggvenn&quot;, &quot;msigdbr&quot;,
+                       &quot;ggfortify&quot;, &quot;ggrepel&quot;, &quot;ggvenn&quot;, &quot;janitor&quot;, &quot;msigdbr&quot;,
                        &quot;org.Mm.eg.db&quot;, &quot;pathview&quot;, &quot;tximport&quot;)) </code></pre>
 <p>Again, it may take some time to install all of the packages.</p>
 <ol start="2" style="list-style-type: decimal">
@@ -321,6 +321,7 @@ <h2><span class="header-section-number">3.2</span> Install Packages</h2>
 library(ggfortify)
 library(ggrepel)
 library(ggvenn)
+library(janitor)
 library(msigdbr)
 library(org.Mm.eg.db)
 library(pathview)