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Create salmon_outputs directory in Data Exploration #13

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tavareshugo opened this issue Nov 25, 2022 · 1 comment
Open

Create salmon_outputs directory in Data Exploration #13

tavareshugo opened this issue Nov 25, 2022 · 1 comment
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@tavareshugo
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Some participants sometimes don't create the salmon_outputs directory from the first session and this then breaks the saveRDS in Data Exploration section.

We can replace this line of code with:

# create directory if it doesn't exist
dir.create("salmon_outputs", showWarnings = FALSE)
# save txi object
saveRDS(txi, file = "salmon_outputs/txi.rds")

(sorry I don't have the data handy to push the fix quickly)

@tavareshugo tavareshugo added bug Something isn't working easy labels Nov 25, 2022
@tavareshugo
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In exercise 2 of Salmon section -- do not create directory (this was already created by us).
Mention that we created with mkdir salmon_outputs ourselves before the course.

Needs fixing in the practical materials and in the solutions markdown.

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