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How to access the R-Studio Server

Start the server

To start the RStudio server use the following command:

rstudio-server --reservation=chilam01_101

Select option 5 (rstudio_scRNAseq_4.3.3.sif) when prompted.

This will send a job to the cluster to start the RStudio server with 8 cores and 32 Gigabytes of memory. Once the job starts you will get a message like this:

To launch the RStudio server:

  • leave this job running in the terminal window (if you stop it, the session will end)
  • copy the URL provided into your browser
  • Enter your username and password. The username is your normal username. The password is given in the message above. Note: The password will change each time you start a new session.
  • Remember to terminate the cluster job when you are finished with session (just press Ctrl + c in the terminal window).

The RStudio server may not start with the working directory set to your Course_Materials directory, so you may need to change this (once you've done this once, it should remember for later sessions.)