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example.vcf
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example.vcf
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##fileformat=VCFv4.3
##fileDate=23/03/2023
##source=AnnotSV
##FILTER=<ID=PASS,Description="Passed filter">
##ALT=<ID=DUP,Description="Duplication">
##ALT=<ID=DEL,Description="Deletion">
##INFO=<ID=SVLEN,Number=1,Type=Integer,Description="length of event">
##INFO=<ID=END,Number=1,Type=Integer,Description="End of event">
##INFO=<ID=CN,Number=1,Type=Integer,Description="Copy number">
##INFO=<ID=SVTYPE,Number=1,Type=String,Description="Type of structural variation">
##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
##contig=<ID=chr1,length=249250621,assembly=hg19>
##contig=<ID=chr2,length=243199373,assembly=hg19>
##contig=<ID=chr3,length=198022430,assembly=hg19>
##contig=<ID=chr4,length=191154276,assembly=hg19>
##contig=<ID=chr5,length=180915260,assembly=hg19>
##contig=<ID=chr6,length=171115067,assembly=hg19>
##contig=<ID=chr7,length=159138663,assembly=hg19>
##contig=<ID=chr8,length=146364022,assembly=hg19>
##contig=<ID=chr9,length=141213431,assembly=hg19>
##contig=<ID=chr10,length=135534747,assembly=hg19>
##contig=<ID=chr11,length=135006516,assembly=hg19>
##contig=<ID=chr12,length=133851895,assembly=hg19>
##contig=<ID=chr13,length=115169878,assembly=hg19>
##contig=<ID=chr14,length=107349540,assembly=hg19>
##contig=<ID=chr15,length=102531392,assembly=hg19>
##contig=<ID=chr16,length=90354753,assembly=hg19>
##contig=<ID=chr17,length=81195210,assembly=hg19>
##contig=<ID=chr18,length=78077248,assembly=hg19>
##contig=<ID=chr19,length=59128983,assembly=hg19>
##contig=<ID=chr20,length=63025520,assembly=hg19>
##contig=<ID=chr21,length=48129895,assembly=hg19>
##contig=<ID=chr22,length=51304566,assembly=hg19>
##contig=<ID=chrM,length=16571,assembly=hg19>
##contig=<ID=chrX,length=155270560,assembly=hg19>
##contig=<ID=chrY,length=59373566,assembly=hg19>
##reference=file:hg19
#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT sample1 sample2
chr1 14110160 . G <DUP:TANDEM> 999 PASS END=14110400 GT 0/1 0/1
chr1 16686412 . A <DUP:TANDEM> 595 PASS END=16686712 GT 0/1 0/1
chr1 230332040 . A <INS> 999 PASS END=230332740 GT 1/1 0/1
chr1 239953384 . C [chr1:239952710[C 350 PASS . GT 0/1 0/1
chr1 242393674 . G <DUP:TANDEM> 600 PASS END=242393874 GT 0/1 0/1
chr1 242919671 . T ]chrY:11818884]T 10 PASS . GT 0/1 0/1
chr2 31823407 . A A]chr12:52950398] 856 PASS . GT 0/1 0/1
chr2 110138404 . T <DEL> . . END=110222824 GT 0/1 0/1
chr3 14396803 . A <INS> 441 PASS END=14396903 GT 1/1 0/1
chr3 183361077 . G GAAGAGAAGAGAAGAGAAGACAAGACAAGACAAGACAAGACAAGACAAGACAAGAC 744 PASS . GT 1/1 0/1
chr4 71552 . T <DEL> . . END=71882 GT 0/1 0/1
chr4 108408748 . G ]chr11:8818116]T . . . GT 0/1 0/1
chr5 723194 . G <DUP> . . END=723394 GT 0/1 0/1
chr5 80251899 . T <INS> 999 PASS END=80261899 GT 1/1 0/1
chr6 21567294 . A <INS> 765 PASS END=28567294 GT 0/1 ./.
chr6 32517394 . T ]chr15:61773012]T 13 PASS . GT 0/1 0/1
chr6 62532367 . T TAGTTC 13 PASS . GT 0/1 0/1
chr6 62832367 . T A 14 PASS . GT 0/1 0/1
chr6 77000000 . T <INV> . . SVTYPE=INV;END=77005390;SVLEN=5390 GT 1/0 0/1
chr6 96497729 . C CATTTGCTGAGGAGTGCTTTACTTCCGATTATGTGGTCAATTTTAGAATAAGTGTGATGTGGTGCTGAGA 414 PASS . GT 1/1 0/1
chr6 108946461 . T <DUP> . PASS SVLEN=359000;CN=4 GT 0/1 0/1
chr6 129457659 . T <DEL> . PASS END=136457659 GT 0/1 0/1
chr7 110320505 . A <INS> . . END=110278505 GT 0/1 0/1
chr8 65056996 . G T . PASS . GT 1/0 0/1
chr9 86541032 . A [chr9:86540929[A 984 PASS . GT 1/1 0/1
chr9 98712815 . A ]chr22:32179722[T . . . GT 0/1 0/1
chr11 8818116 . G G[chr4:108408748[ 797 PASS . GT 0/1 0/1
chr11 38989189 . CTTTCTTTCTTTTTCGTTTCCTTCCTTCCTTCCATGCTTCCTTCCTTCCTGCCTGCCTTTTTTTTTT C 345 PASS . GT 0/1 0/1
chr11 66287088 . A <DEL> . . END=66288088 GT 0/1 0/1
chr11 90159990 . A AGCACTTGAGCCTGGCCAACAAGACTGAAACTCCATCTAAAAAAAAAAAAAAAAAAAAAATAGGGTAATTTAC 132 PASS . GT 0/1 0/1
chr11 131266685 . TACACTGCATATATATACAGATATATACAGTGTATATATATACAGATATATGCAGTGTATATATATACAGTGTATATATATACAGATATATGCAGTGTATATATATACAGTGTATATATATACGTT TGCA 222 PASS . GT 0/1 0/1
chr12 30793848 . A <DEL> . PASS END=131761670 GT 0/1 ./.
chr12 52950398 . T ]chr2:31823407[G . . . GT 0/1 0/1
chr12 76738542 . G A . PASS . GT 0/1 0/1
chr12 93484972 . ACAC ATATATATATACATATATATACATATATATATATACACACATATATATACATATATATATATACACATATATCTATACATATATATATAT 268 PASS . GT 1/1 0/1
chr12 114828444 . A <INS> 975 PASS END=114828644 GT 0/1 0/1
chr13 86026500 . CCATCATATATATATATATATATATATATATATATGATGGAAATTTTGACTTTTAAAA C 663 PASS . GT 1/1 0/1
chr14 34988579 . ATATAT AAAAAAATATATATATATATAACATATATATATATATAACATATATATAACATATATATATATAACATATATATAAC 266 PASS . GT 1/1 ./.
chr14 50000000 . A <CNV:CN3> 9.6 PASS SVTYPE=CNV;END=60000000;SVLEN=12335600 GT 1/0 0/1
chr14 70000000 . A <CNV:CN5> 9.6 PASS SVTYPE=CNV;END=80000000;SVLEN=12335600 GT 1|0 0/1
chr15 34735949 . G <DEL> . . END=34735749 GT 0/1 0/1
chr15 61773012 . T T]chr6:32517394] . . . GT 0/1 0/1
chr16 1565629 . C <DUP> . . END=1570629 GT 0/1 0/1
chr16 21935448 . G <DUP:TANDEM> 714 PASS END=21937448 GT 0/1 0/1
chr16 25873306 . CCATCCATCCATCCATCCTTCCTTCCTTCCTTTCATCCATCTATCCATCCATCCACCTAGCAAGCCATCCAGT C 284 PASS . GT 1/1 0/1
chr16 34050155 . GCCCGCGACTCCGCGGCTTTTTGCCGCCGCCTCCGCGGCTTTTCCCCCGCGACTCCGCGGCTTTTTGCCGCCGCCTCCGCGGCTTTTTC G 374 PASS . GT 0/1 0/1
chr16 34060175 . A C . PASS . GT 0/1 0/1
chr16 36353046 . A T[chr19:27240843[ 32 PASS . GT 1/1 0/1
chr17 25539212 . A <DUP:TANDEM> 353 PASS END=25539800 GT 1/1 0/1
chr17 54627815 . AAATCATCTGCTTGCAGTATATTTGCAGAAACCAAATAATCAAAGGGACTT A 659 PASS . GT 0/1 0/1
chr17 82333571 . A <DUP:TANDEM> 258 PASS END=82335000 GT 0/1 0/1
chr19 27240843 . G ]chr16:36353046]T . PASS . GT 0/1 0/1
chr19 17708402 . A ATATATACTATATATAGTATATATACTATATACTATATATAGTATATATAC 598 PASS . GT 1/1 ./.
chr20 29054617 . A A]chr21:5216478] 60 PASS . GT 0/1 0/1
chr21 5216478 . G ]chr20:29054617]A 60 PASS . GT 0/1 0/1
chr22 32179722 . T A[chr9:98712815[ 222 PASS . GT 0/1 0/1
chrX 53239925 . T C . PASS . GT 0/1 0/1
chrY 11818884 . C T]chr1:242919671] 60 PASS . GT 0/1 0/1