diff --git a/images/image-FAIR.png b/images/image-FAIR.png new file mode 100644 index 0000000..3d5d155 Binary files /dev/null and b/images/image-FAIR.png differ diff --git a/images/image-FAIRprinciples.jpg b/images/image-FAIRprinciples.jpg new file mode 100644 index 0000000..9c49757 Binary files /dev/null and b/images/image-FAIRprinciples.jpg differ diff --git a/images/image-GOFAIR.png b/images/image-GOFAIR.png new file mode 100644 index 0000000..b6c93ce Binary files /dev/null and b/images/image-GOFAIR.png differ diff --git a/images/image-dataType-Kissing2018.jpg b/images/image-dataType-Kissing2018.jpg new file mode 100644 index 0000000..57819e9 Binary files /dev/null and b/images/image-dataType-Kissing2018.jpg differ diff --git a/images/image-datalifecycle.png b/images/image-datalifecycle.png new file mode 100644 index 0000000..a90eb1f Binary files /dev/null and b/images/image-datalifecycle.png differ diff --git a/index.qmd b/index.qmd index 4cff9b3..f638f3b 100644 --- a/index.qmd +++ b/index.qmd @@ -3,7 +3,7 @@ from: markdown+emoji format: revealjs: logo: images/logo-affiliation.png - footer: "{{< fa brands github >}}  " + footer: "{{< fa brands github >}}  " smaller: true auto-stretch: false chalkboard: true diff --git a/sections/slides.qmd b/sections/slides.qmd index 9f4ced5..63a3388 100644 --- a/sections/slides.qmd +++ b/sections/slides.qmd @@ -196,7 +196,7 @@ The targets of this note are above all researchers, managers, engineers and data -## Data & Metadata : *about you?" +## Data & Metadata : *about you?* **What kind of data and/or metadata are you using for your research ?** @@ -206,8 +206,6 @@ The targets of this note are above all researchers, managers, engineers and data **DATA** -::: - ::: {.column .center width=50%} **METADATA** @@ -280,7 +278,7 @@ The targets of this note are above all researchers, managers, engineers and data -## Data type : *definition* +## Data categories : *definition* **What kind of data and/or metadata are you using for your research ?** @@ -304,13 +302,43 @@ The targets of this note are above all researchers, managers, engineers and data -## Data types : *by formats, types, ...* +## Data categories : *questions to ask and characterization of data* + +:::: {.columns} + +::: {.column width=50%} + +Characterization of data: + +- Temporal information (e.g. longitudinal data / time series (LTS)) +- Spatial information (spatial data (GIS, occurrences, remote sensing, etc.) +- Textual data (csv, DNA, …) +- Taxonomic data +- Trait data +- ... + +::: + +::: {.column .center width=50%} + +**Link these informations with your biodiversity research projects** + +![](images/image_DataMetadata.png){width=100%} +::: + +:::: + + + + +## Data categories : *classification* + :::: {.columns} ::: {.column width=33%} -By format (classification EML classification) : +**By format** (Ecological Metadata Language - EML - classification) : - data Table - spatial raster @@ -322,7 +350,7 @@ By format (classification EML classification) : ::: {.column .center width=33%} -By type: +**By type**: - Citizen science - Sensors @@ -334,7 +362,7 @@ By type: ::: {.column width=33%} -Others classifications: +**Others classifications:** - Temporal information (e.g. longitudinal data / time series (LTS)) - Spatial information (spatial data (GIS, occurrences, remote sensing, etc.) @@ -347,11 +375,10 @@ Others classifications: :::: -::: - + -## Data types : *by formats* +## Data categories : *by formats* :::: {.columns} @@ -376,6 +403,129 @@ By format (classification EML classification) : ![](images/image-logo-eml.jpg){width=10%} -[Matthew B. Jones, Margaret O’Brien, Bryce Mecum, Carl Boettiger, Mark Schildhauer, Mitchell Maier, Timothy Whiteaker, Stevan Earl, Steven Chong. 2019. Ecological Metadata Language version 2.2.0. KNB Data Repository.](https://eml.ecoinformatics.org/eml-schema) +[Matthew B. Jones, *et al.,* 2019. Ecological Metadata Language version 2.2.0. KNB Data Repository.](https://eml.ecoinformatics.org/eml-schema) + +::: + + + +## Data categories : *by types* + +:::: {.columns} + +::: {.column width=25%} + +- Citizen science +- Sensors +- DNA-based techniques +- Satellite remote sensing +- Others (simulated data) + +::: + +::: {.column .center width=75%} + +![](images/image-dataType-Kissing2018.jpg){width=100%} +[Kissling W.D. et al., 2018](https://doi.org/10.1111/brv.12359) +::: + +:::: + +::: + + + +## Data categories : *others classifications* + +- Longitudinal data / time series (LTS) +- Spatial data (GIS, occurrences, remote sensing, etc.) +- Textual data (csv, DNA, …) + + + +## Good practises and frameworks + +:::: {.columns} + +::: {.column width=33%} + +the Data life cycle + +![](images/image-datalifecycle.png){width=100%} + +::: + +::: {.column .center width=33%} + +the FAIR Principles + +![](images/image-FAIR.png){width=100%} + +::: + +::: {.column width=33%} + +Flux and stocks of data + +![](images/image-Flux_dispositifs_SI.png){width=100%} + +::: + +:::: + +::: + + + +## Good practises and frameworks : *the data life cycle* + +:::: {.columns} + +::: {.column width=25%} + +The data lifecycle is the set of stages of management, conservation and dissemination of research data, associated with research activities. + +*for more information : [PNDB web page](https://www.pndb.fr/fr/ressources/principes-fair-et-cycle-de-vie-des-donnees)* + +::: + +::: {.column .center width=75%} + +![](images/image-datalifecycle.png){width=100%} +::: + +:::: + +::: + + +## Good practises and frameworks : *the FAIR principles* + +:::: {.columns} + +::: {.column width=60%} + +A set of guiding principles for managing research data to make it findable, accessible, interoperable, and reusable by humans and machines. + +**“This is the way!”** + +![](images/image-FAIR.png){width=60%} + +![](images/image-GOFAIR.png){width=40%} + +::: + +::: {.column width=40%} + +![](images/image-FAIRprinciples.jpg){width=800%} + +[Wilkinson M. D. et al., 2017](https://doi.org/10.1038/sdata.2016.18) +::: + +:::: + +*for more information : [PNDB web page](https://www.pndb.fr/fr/ressources/principes-fair-et-cycle-de-vie-des-donnees)* + +::: + -::: \ No newline at end of file