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Sambamba subsample produces truncated BAMs #506

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Sven-Winter opened this issue Jun 14, 2023 · 0 comments

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bug

Sven-Winter commented Jun 14, 2023

Subsampled BAM files generated with sambamba subsample are truncated and cannot be indexed neither with sambamba index nor samtools index

We have tried different sambamba version from conda (0.6.9, 0.8.2) with the same results.

Sven-Winter added the bug label

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