Changes

v0.3.0 2024-07-08 Coublanc
--------------------------

- better documentation (thanks to Corentin Moumard)
- implementation of Muse and Gaut 94 evolution model
- few bug fixes and API changes

v0.2.0 2023-05-05 Maillezais
----------------------------

- Phylo_ctmc: pruning algorithm with ambiguous observations
- Phylo_ctmc: introduced matrix decomposition to reduce pruning complexity
- Codon: implemented all genetic codes
- Simulator: optimized implementation for Gillespie direct method
- Newick: improved representation and conversion to Tree
- few other optimizations, more tests


v0.1.0 2021-11-09 Villeurbanne
------------------------------

- new Nucleotide_process module, implementing classical nucleotide
  evolution models
- Mutsel: added persistent positive selection
- Rate_matrix: added HKY85 model
- Alphabet, Alignment: a few more functions

v0.0.0 2021-11-09 Villeurbanne
------------------------------

First release on OPAM