Skip to content

Issues: bioFAM/MOFA2

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

65 Open 74 Closed
65 Open 74 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

In CellScatter The <scale> argument of guides() cannot be FALSE.
#171 opened Nov 11, 2024 by Rfriedmancolumbia
Error running MOFA with covariates (MEFISTO)
#170 opened Oct 29, 2024 by smdabdoub
Uncertainty Estimates of trained MOFA model
#169 opened Oct 19, 2024 by phlicht
incorrect plot margins in correlate_factors_with_covariates
#168 opened Sep 19, 2024 by Cleiti
Questions about using MOFA with bulk RNA-seq deconvolution results and uneven view sizes
#167 opened Sep 15, 2024 by doctorfaraday520
Empty factors - Spatial Transcripomics data
#165 opened Jul 13, 2024 by rockdeme
run_enrichment does not work when selecting a single factor
#164 opened Jun 16, 2024 by jjcaff
not using the GPU well
#163 opened Jun 14, 2024 by dorothyzh
prepare_mofa function doesn't seem to train the model
#162 opened Jun 4, 2024 by nis2034
2
The <scale> argument of guides() cannot be FALSE deprecation
#161 opened May 10, 2024 by artur-sannikov
Error: run_enrichment error feature.sets has to be a list or a binary matrix.**
#160 opened Apr 23, 2024 by mluciarr
Error: Error in h5checktype(). H5Identifier not valid.
#159 opened Apr 18, 2024 by mluciarr
plot_enrichment_detailed function is not creating labeled plots
#158 opened Mar 27, 2024 by velenjak1
3
Outdated links to tutorials on website
#157 opened Mar 27, 2024 by artur-sannikov
1
AttributeError: Module 'scipy' has no attribute 'shape'
#156 opened Mar 26, 2024 by nbutyrate
7
Error in create_mofa_from_Seurat(BJ, groups = NULL, assays = c("RNA", :
#155 opened Mar 26, 2024 by nbutyrate
AttributeError: Module 'scipy' has no attribute 'shape'
#154 opened Mar 21, 2024 by madp4rry
2
correlate_covariates: redundant conversion to numeric and incorrect warning
#152 opened Mar 20, 2024 by artur-sannikov
1
get_factors and get_variance_explained
#151 opened Mar 20, 2024 by artur-sannikov
Incorrect description of plot_top_weights?
#150 opened Mar 20, 2024 by artur-sannikov
Error in training options
#149 opened Mar 6, 2024 by vamikakarn
Incorrect links to documentation on website
#148 opened Feb 29, 2024 by artur-sannikov
Mefisto error - ValueError: operands could not be broadcast together with shapes (10,1) (23,1)
#147 opened Feb 21, 2024 by saum-kmr
5
AttributeError: 'BayesNet' object has no attribute 'train_stats'
#146 opened Feb 14, 2024 by Marwansha
2
Get noise terms with MOFA2 R package
#145 opened Jan 22, 2024 by BangzhuoTongUU
ProTip! Add no:assignee to see everything that’s not assigned.