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@bio2bel

Bio2BEL

Enabling Biological Expression Language to act as a semantic integration layer for multi-modal and multi-scale data sets in the life sciences

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  1. bio2bel bio2bel Public

    A Python framework for integrating biological databases and structured data sources in Biological Expression Language (BEL)

    Python 21 5

  2. kegg kegg Public

    A Bio2BEL package for integrating pathway-related information from KEGG in BEL

    Python 13 4

  3. drugbank drugbank Public

    A Bio2BEL package for DrugBank (https://www.drugbank.ca)

    Python 9 4

  4. hmdb hmdb Public

    A Bio2BEL package for converting the Human Metabolite Database (HMDB) to BEL

    Python 5 1

  5. reactome reactome Public

    Integration of pathway-related information from Reactome in BEL

    Python 5 1

  6. pubchem pubchem Public

    NCBI PubChem to BEL

    Python 5

Repositories

Showing 10 of 60 repositories
  • kegg Public

    A Bio2BEL package for integrating pathway-related information from KEGG in BEL

    bio2bel/kegg’s past year of commit activity
    Python 13 MIT 4 2 1 Updated Feb 11, 2022
  • bio2bel Public

    A Python framework for integrating biological databases and structured data sources in Biological Expression Language (BEL)

    bio2bel/bio2bel’s past year of commit activity
    Python 21 MIT 5 21 1 Updated Nov 3, 2021
  • drugbank Public

    A Bio2BEL package for DrugBank (https://www.drugbank.ca)

    bio2bel/drugbank’s past year of commit activity
    Python 9 MIT 4 3 0 Updated Dec 14, 2020
  • reactome Public

    Integration of pathway-related information from Reactome in BEL

    bio2bel/reactome’s past year of commit activity
    Python 5 MIT 1 0 0 Updated Nov 18, 2020
  • wikipathways Public

    Integration of pathway-related information from WikiPathways in BEL

    bio2bel/wikipathways’s past year of commit activity
    Python 3 MIT 1 0 0 Updated Nov 18, 2020
  • msig Public

    Integration of pathway-related information from MSigDB in BEL

    bio2bel/msig’s past year of commit activity
    Python 2 MIT 0 0 0 Updated Nov 18, 2020
  • dbsnp Public

    Converting dbSNP mutation information to BEL

    bio2bel/dbsnp’s past year of commit activity
    Python 0 MIT 0 1 0 Updated Jul 20, 2020
  • hgnc Public

    Hugo Gene Nomenclature Consortium (HGNC) to BEL

    bio2bel/hgnc’s past year of commit activity
    Python 2 MIT 0 2 0 Updated Mar 29, 2020
  • go Public

    A Bio2BEL package for converting the Gene Ontology (GO) to BEL

    bio2bel/go’s past year of commit activity
    Python 1 MIT 0 1 0 Updated Mar 28, 2020
  • mirtarbase Public

    Serializes text-mined miRNA-target interactions to BEL

    bio2bel/mirtarbase’s past year of commit activity
    Python 0 MIT 0 7 0 Updated Mar 12, 2020
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