From 7de534fe994dacfb5bd3ca4d169a14e59da06486 Mon Sep 17 00:00:00 2001 From: Bill Denney Date: Sat, 15 Oct 2022 21:57:41 -0400 Subject: [PATCH] Fix notes --- cran-comments.md | 12 ++++++++++++ vignettes/v01-introduction-and-usage.Rmd | 2 +- vignettes/v02-example-theophylline.Rmd | 2 +- vignettes/v07-unit-conversion.Rmd | 2 +- 4 files changed, 15 insertions(+), 3 deletions(-) create mode 100644 cran-comments.md diff --git a/cran-comments.md b/cran-comments.md new file mode 100644 index 00000000..4eaa6d0b --- /dev/null +++ b/cran-comments.md @@ -0,0 +1,12 @@ +## R CMD check results + +Invalid URLs that were found during the previous CRAN submission of version +0.10.0 are fixed: + +* Found the following (possibly) invalid file URIs: + URI: Example-theophylline.html + From: inst/doc/v01-introduction-and-usage.html + URI: Superposition.html + From: inst/doc/v02-example-theophylline.html + URI: Example-theophylline.html + From: inst/doc/v07-unit-conversion.html diff --git a/vignettes/v01-introduction-and-usage.Rmd b/vignettes/v01-introduction-and-usage.Rmd index 2bf74c93..ac78d433 100644 --- a/vignettes/v01-introduction-and-usage.Rmd +++ b/vignettes/v01-introduction-and-usage.Rmd @@ -31,7 +31,7 @@ library will be discussed in a separate vignette. # Quick Start The simplest analysis requires concentration and dosing data, then -five function calls can provide summarized results. (Please note that this and the other examples in this document are intended to show the typical workflow, but they are not intended to run directly. For an example to run directly, please see [the theophylline example](Example-theophylline.html).) +five function calls can provide summarized results. (Please note that this and the other examples in this document are intended to show the typical workflow, but they are not intended to run directly. For an example to run directly, please see [the theophylline example](v02-example-theophylline.html).) ```{r setup_data} library(PKNCA) diff --git a/vignettes/v02-example-theophylline.Rmd b/vignettes/v02-example-theophylline.Rmd index 390a7a4f..a43b5b85 100644 --- a/vignettes/v02-example-theophylline.Rmd +++ b/vignettes/v02-example-theophylline.Rmd @@ -96,7 +96,7 @@ knitr::kable(summary(results_obj_manual)) Assessing multiple dose pharmacokinetics is conceptually the same as single-dose in PKNCA. -To assess multiple dose PK, the theophylline data will be extended from single to multiple doses using superposition (see the [Superposition](Superposition.html) vignette for more information). +To assess multiple dose PK, the theophylline data will be extended from single to multiple doses using superposition (see the [superposition](v20-superposition.html) vignette for more information). ```{r superposition} d_conc <- PKNCAconc(as.data.frame(Theoph), conc~Time|Subject) diff --git a/vignettes/v07-unit-conversion.Rmd b/vignettes/v07-unit-conversion.Rmd index 63eda21d..4cd7f6a1 100644 --- a/vignettes/v07-unit-conversion.Rmd +++ b/vignettes/v07-unit-conversion.Rmd @@ -73,7 +73,7 @@ d_units_clean_manual[d_units_clean_manual$PPTESTCD %in% c("cmax", "tmax", "aucla # The Basic Steps to Add Units to an NCA Analysis -For more details on parts of this NCA calculation example unrelated to units, see the [theophylline example vignette](Example-theophylline.html). +For more details on parts of this NCA calculation example unrelated to units, see the [theophylline example vignette](v02-example-theophylline.html). ```{r create-conc-dose-obj} conc_obj <- PKNCAconc(as.data.frame(datasets::Theoph), conc~Time|Subject)