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This repository has been archived by the owner on Jan 25, 2018. It is now read-only.
I am relatively new to python and not an experienced programmer. I get the following error message when trying to import h5py in Spyder (I get similar error when importing at the terminal).
Could you pleas help? Thanks.
Warning! HDF5 library version mismatched error
The HDF5 header files used to compile this application do not match
the version used by the HDF5 library to which this application is linked.
Data corruption or segmentation faults may occur if the application continues.
This can happen when an application was compiled by one version of HDF5 but
linked with a different version of static or shared HDF5 library.
You should recompile the application or check your shared library related
settings such as 'LD_LIBRARY_PATH'.
You can, at your own risk, disable this warning by setting the environment
variable 'HDF5_DISABLE_VERSION_CHECK' to a value of '1'.
Setting it to 2 or higher will suppress the warning messages totally.
Headers are 1.8.17, library is 1.8.15
SUMMARY OF THE HDF5 CONFIGURATION
=================================
General Information:
HDF5 Version: 1.8.15-patch1
Configured on: Tue Aug 25 22:15:09 UTC 2015
Configured by: [email protected]
Configure mode: production
Host system: x86_64-unknown-linux-gnu
Uname information: Linux localhost.localdomain 2.6.18-398.el5 #1 SMP Tue Sep 16 20:50:52 EDT 2014 x86_64 x86_64 x86_64 GNU/Linux
Byte sex: little-endian
Libraries: static, shared
Installation point: /home/vagrant/miniconda/envs/_build
Statically Linked Executables: no
LDFLAGS:
H5_LDFLAGS:
AM_LDFLAGS: -L/home/vagrant/miniconda/envs/_build/lib
Extra libraries: -lrt -lz -ldl -lm
Archiver: ar
Ranlib: ranlib
Debugged Packages:
API Tracing: no
Languages:
Fortran: no
C++: yes
C++ Compiler: /home/vagrant/miniconda/envs/_build/bin/g++ ( g++ (GCC) 4.8.5)
C++ Flags:
H5 C++ Flags:
AM C++ Flags:
Shared C++ Library: yes
Static C++ Library: yes
Features:
Parallel HDF5: no
High Level library: yes
Threadsafety: no
Default API Mapping: v18
With Deprecated Public Symbols: yes
I/O filters (external): deflate(zlib)
MPE: no
Direct VFD: no
dmalloc: no
Clear file buffers before write: yes
Using memory checker: no
Function Stack Tracing: no
Strict File Format Checks: no
Optimization Instrumentation: no
Bye...
The text was updated successfully, but these errors were encountered:
Hello,
I am relatively new to python and not an experienced programmer. I get the following error message when trying to import h5py in Spyder (I get similar error when importing at the terminal).
Could you pleas help? Thanks.
Warning! HDF5 library version mismatched error
The HDF5 header files used to compile this application do not match
the version used by the HDF5 library to which this application is linked.
Data corruption or segmentation faults may occur if the application continues.
This can happen when an application was compiled by one version of HDF5 but
linked with a different version of static or shared HDF5 library.
You should recompile the application or check your shared library related
settings such as 'LD_LIBRARY_PATH'.
You can, at your own risk, disable this warning by setting the environment
variable 'HDF5_DISABLE_VERSION_CHECK' to a value of '1'.
Setting it to 2 or higher will suppress the warning messages totally.
Headers are 1.8.17, library is 1.8.15
SUMMARY OF THE HDF5 CONFIGURATION
=================================
General Information:
Compiling Options:
Statically Linked Executables: no
LDFLAGS:
H5_LDFLAGS:
AM_LDFLAGS: -L/home/vagrant/miniconda/envs/_build/lib
Extra libraries: -lrt -lz -ldl -lm
Archiver: ar
Ranlib: ranlib
Debugged Packages:
API Tracing: no
Languages:
Features:
With Deprecated Public Symbols: yes
I/O filters (external): deflate(zlib)
MPE: no
Direct VFD: no
dmalloc: no
Clear file buffers before write: yes
Using memory checker: no
Function Stack Tracing: no
Strict File Format Checks: no
Optimization Instrumentation: no
Bye...
The text was updated successfully, but these errors were encountered: