pom.xml

<?xml version="1.0" encoding="UTF-8"?>
<project xmlns="http://maven.apache.org/POM/4.0.0"
  xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
  xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 https://maven.apache.org/xsd/maven-4.0.0.xsd">
  <modelVersion>4.0.0</modelVersion>
  <groupId>sprt</groupId>
  <artifactId>SPRT</artifactId>
  <version>0.0.1</version>
  <name>SPRT</name>
  <description>Real-time fMRI Data Analytics Using Sequential Probability Ratio Test</description>
  <properties>
    <maven.compiler.source>17</maven.compiler.source>
    <maven.compiler.target>17</maven.compiler.target>
  </properties>
  <build>
    <sourceDirectory>src/main/java</sourceDirectory>
    <plugins>
      <plugin>
        <groupId>org.apache.maven.plugins</groupId>
        <artifactId>maven-compiler-plugin</artifactId>
        <version>3.8.1</version>
        <configuration>
          <source>${maven.compiler.source}</source>
          <target>${maven.compiler.target}</target>
          <compilerArgs>
            <arg>-h</arg>
            <arg>${project.basedir}/src/main/native</arg>
          </compilerArgs>
        </configuration>
      </plugin>
      <plugin>
        <artifactId>maven-assembly-plugin</artifactId>
        <executions>
          <execution>
            <id>make-assembly</id>
            <phase>package</phase>
            <goals>
              <goal>single</goal>
            </goals>
            <configuration>
              <descriptors>
                <descriptor>src/assembly/assembly.xml</descriptor>
              </descriptors>
            </configuration>
          </execution>
        </executions>
        <configuration>
          <archive>
            <manifest>
              <mainClass>sprt.experiment.RealExperiment</mainClass>
            </manifest>
          </archive>
          <descriptorRefs>
            <descriptorRef>jar-with-dependencies</descriptorRef>
          </descriptorRefs>
        </configuration>
      </plugin>
      <plugin>
        <groupId>org.apache.maven.plugins</groupId>
        <artifactId>maven-surefire-plugin</artifactId>
        <version>3.3.0</version>
        <configuration>
          <includes>
            <include>**/*Test.java</include>
          </includes>
        </configuration>
      </plugin>
      <!-- Maven Exec Plugin for Compiling C++ Code -->
      <plugin>
        <groupId>org.codehaus.mojo</groupId>
        <artifactId>exec-maven-plugin</artifactId>
        <version>3.0.0</version>
        <executions>
            <execution>
                <id>compile-cpp</id>
                <phase>compile</phase>
                <goals>
                    <goal>exec</goal>
                </goals>
                <configuration>
                    <executable>sh</executable>
                    <arguments>
                        <argument>-c</argument>
                        <argument>
                            g++ -O3 -std=c++11 -I${java.home}/include -I${java.home}/include/linux -shared -fPIC -o ${project.build.directory}/libsprt_native.so $(find ${project.basedir}/src/main/native -name '*.cpp')
                        </argument>
                    </arguments>
                </configuration>
            </execution>
            <execution>
                <id>compile-cuda</id>
                <phase>compile</phase>
                <goals>
                    <goal>exec</goal>
                </goals>
                <configuration>
                    <executable>sh</executable>
                    <arguments>
                        <argument>-c</argument>
                        <argument>
                            nvcc -O3 -std=c++11 --default-stream per-thread -allow-unsupported-compiler -lcublas -I${java.home}/include -I${java.home}/include/linux -shared -Xcompiler -fPIC -o ${project.build.directory}/libsprt_native_cuda.so $(find ${project.basedir}/src/main/native -name '*.cu')
                        </argument>
                    </arguments>
                </configuration>
            </execution>
        </executions>
    </plugin>
    </plugins>
  </build>
  <dependencies>
    <dependency>
      <groupId>org.junit.jupiter</groupId>
      <artifactId>junit-jupiter-engine</artifactId>
      <version>5.9.1</version>
      <scope>test</scope>
    </dependency>
    <!-- https://mvnrepository.com/artifact/org.bytedeco/mkl -->
    <dependency>
      <groupId>org.bytedeco</groupId>
      <artifactId>mkl-platform</artifactId>
      <version>2024.0-1.5.10</version>
    </dependency>

    <!-- https://mvnrepository.com/artifact/org.apache.spark/spark-core -->
    <dependency>
      <groupId>org.apache.spark</groupId>
      <artifactId>spark-core_2.13</artifactId>
      <version>3.5.0</version>
      <scope>provided</scope>
    </dependency>
  </dependencies>
</project>