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warning in ./cms example #51

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khorsans opened this issue Jul 15, 2024 · 4 comments
Open

warning in ./cms example #51

khorsans opened this issue Jul 15, 2024 · 4 comments

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@khorsans
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Hello,

As you mentioned in the model guide, I attempted to run the CMS model experimentally without modifying any files. I executed the following commands:

./getdata getdata_example 1
which downloaded 13 nc files. Then, I moved them using:

mv expt_getdata_example/nests/* expt_example/nests/.
Finally, I ran the command:

./cms example
However, I encountered the following error:

File name : traj_file_1
Total number of release events : 3 (numbers 1 to 3)
Total number of particles released : 30
Total number of time steps : 289
Total number of time steps in output file: 11

WARNING: File expt_example/nests/nest_1_20160114000000.nc expected but not found.
Could you please guide me on what might be causing this issue? Your assistance would be greatly appreciated.

Thank you
@milancurcic
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Hi @khorsans, I recently introduced the print statement for this warning to help diagnose when expected nest files are missing. The condition of this warning was previously there, just not printed. Can you check if you get all expected output files as per the example README?

@khorsans
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I received two files named con_file_1 and traj_file_1 in the directory expt_example/output, but neither of them is .nc files. The size of traj_file_1 is 14kb and con_file_1 is 1kb. I opened traj_file_1 with vi:
1 1 0 277.200 24.660 0.000 0.000 0 2457389.000 1
1 2 0 277.200 24.660 0.000 0.000 0 2457389.000 1
1 3 0 277.200 24.660 0.000 0.000 0 2457389.000 1
1 4 0 277.200 24.660 0.000 0.000 0 2457389.000 1
1 5 0 277.200 24.660 0.000 0.000 0 2457389.000 1
1 6 0 277.200 24.660 0.000 0.000 0 2457389.000 1
1 7 0 277.200 24.660 0.000 0.000 0 2457389.000 1
1 8 0 277.200 24.660 0.000 0.000 0 2457389.000 1
1 9 0 277.200 24.660 0.000 0.000 0 2457389.000 1
1 10 0 277.200 24.660 0.000 0.000 0 2457389.000 1
2 1 0 277.200 24.660 0.000 0.000 0 2457390.000 1
2 2 0 277.200 24.660 0.000 0.000 0 2457390.000 1
2 3 0 277.200 24.660 0.000 0.000 0 2457390.000 1
2 4 0 277.200 24.660 0.000 0.000 0 2457390.000 1
2 5 0 277.200 24.660 0.000 0.000 0 2457390.000 1
2 6 0 277.200 24.660 0.000 0.000 0 2457390.000 1
2 7 0 277.200 24.660 0.000 0.000 0 2457390.000 1
2 8 0 277.200 24.660 0.000 0.000 0 2457390.000 1
2 9 0 277.200 24.660 0.000 0.000 0 2457390.000 1
2 10 0 277.200 24.660 0.000 0.000 0 2457390.000 1
3 1 0 277.200 24.660 0.000 0.000 0 2457391.000 1
3 2 0 277.200 24.660 0.000 0.000 0 2457391.000 1
3 3 0 277.200 24.660 0.000 0.000 0 2457391.000 1
3 4 0 277.200 24.660 0.000 0.000 0 2457391.000 1
3 5 0 277.200 24.660 0.000 0.000 0 2457391.000 1
3 6 0 277.200 24.660 0.000 0.000 0 2457391.000 1
3 7 0 277.200 24.660 0.000 0.000 0 2457391.000 1
3 8 0 277.200 24.660 0.000 0.000 0 2457391.000 1
3 9 0 277.200 24.660 0.000 0.000 0 2457391.000 1
3 10 0 277.200 24.660 0.000 0.000 0 2457391.000 1
1 1 86400 277.193 24.699 0.000 4.420 0 2457389.000 1
1 2 86400 277.193 24.699 0.000 4.420 0 2457389.000 1
1 3 86400 277.193 24.699 0.000 4.420 0 2457389.000 1
1 4 86400 277.193 24.699 0.000 4.420 0 2457389.000 1
1 5 86400 277.193 24.699 0.000 4.420 0 2457389.000 1
1 6 86400 277.193 24.699 0.000 4.420 0 2457389.000 1
1 7 86400 277.193 24.699 0.000 4.420 0 2457389.000 1
1 8 86400 277.193 24.699 0.000 4.420 0 2457389.000 1
1 9 86400 277.193 24.699 0.000 4.420 0 2457389.000 1
1 10 86400 277.193 24.699 0.000 4.420 0 2457389.000 1
1 1 172800 277.161 24.689 0.000 7.839 -4 2457389.000 1
1 2 172800 277.161 24.689 0.000 7.839 -4 2457389.000 1
1 3 172800 277.161 24.689 0.000 7.839 -4 2457389.000 1
1 4 172800 277.161 24.689 0.000 7.839 -4 2457389.000 1
1 5 172800 277.161 24.689 0.000 7.839 -4 2457389.000 1
1 6 172800 277.161 24.689 0.000 7.839 -4 2457389.000 1
1 7 172800 277.161 24.689 0.000 7.839 -4 2457389.000 1
1 8 172800 277.161 24.689 0.000 7.839 -4 2457389.000 1
1 9 172800 277.161 24.689 0.000 7.839 -4 2457389.000 1
1 10 172800 277.161 24.689 0.000 7.839 -4 2457389.000 1
2 1 86400 277.185 24.648 0.000 2.015 0 2457390.000 1
2 2 86400 277.185 24.648 0.000 2.015 0 2457390.000 1
2 3 86400 277.185 24.648 0.000 2.015 0 2457390.000 1
2 4 86400 277.185 24.648 0.000 2.015 0 2457390.000 1
2 5 86400 277.185 24.648 0.000 2.015 0 2457390.000 1
2 6 86400 277.185 24.648 0.000 2.015 0 2457390.000 1
2 7 86400 277.185 24.648 0.000 2.015 0 2457390.000 1
2 8 86400 277.185 24.648 0.000 2.015 0 2457390.000 1
2 9 86400 277.185 24.648 0.000 2.015 0 2457390.000 1
2 10 86400 277.185 24.648 0.000 2.015 0 2457390.000 1
2 1 172800 277.187 24.607 0.000 6.582 -4 2457390.000 1
2 2 172800 277.187 24.607 0.000 6.582 -4 2457390.000 1
2 3 172800 277.187 24.607 0.000 6.582 -4 2457390.000 1
2 4 172800 277.187 24.607 0.000 6.582 -4 2457390.000 1
2 5 172800 277.187 24.607 0.000 6.582 -4 2457390.000 1
2 6 172800 277.187 24.607 0.000 6.582 -4 2457390.000 1
2 7 172800 277.187 24.607 0.000 6.582 -4 2457390.000 1
2 8 172800 277.187 24.607 0.000 6.582 -4 2457390.000 1
2 9 172800 277.187 24.607 0.000 6.582 -4 2457390.000 1
2 10 86400 277.185 24.648 0.000 2.015 0 2457390.000 1
2 1 172800 277.187 24.607 0.000 6.582 -4 2457390.000 1
2 2 172800 277.187 24.607 0.000 6.582 -4 2457390.000 1
2 3 172800 277.187 24.607 0.000 6.582 -4 2457390.000 1
2 4 172800 277.187 24.607 0.000 6.582 -4 2457390.000 1
2 5 172800 277.187 24.607 0.000 6.582 -4 2457390.000 1
2 6 172800 277.187 24.607 0.000 6.582 -4 2457390.000 1
2 7 172800 277.187 24.607 0.000 6.582 -4 2457390.000 1
2 8 172800 277.187 24.607 0.000 6.582 -4 2457390.000 1
2 9 172800 277.187 24.607 0.000 6.582 -4 2457390.000 1
2 10 172800 277.187 24.607 0.000 6.582 -4 2457390.000 1
3 1 86400 277.200 24.610 0.000 5.576 0 2457391.000 1
3 2 86400 277.200 24.610 0.000 5.576 0 2457391.000 1
3 3 86400 277.200 24.610 0.000 5.576 0 2457391.000 1
3 4 86400 277.200 24.610 0.000 5.576 0 2457391.000 1
3 5 86400 277.200 24.610 0.000 5.576 0 2457391.000 1
3 6 86400 277.200 24.610 0.000 5.576 0 2457391.000 1
3 7 86400 277.200 24.610 0.000 5.576 0 2457391.000 1
3 8 86400 277.200 24.610 0.000 5.576 0 2457391.000 1
3 9 86400 277.200 24.610 0.000 5.576 0 2457391.000 1
3 10 86400 277.200 24.610 0.000 5.576 0 2457391.000 1
3 1 172800 277.114 24.477 0.000 22.681 0 2457391.000 1
3 2 172800 277.114 24.477 0.000 22.681 0 2457391.000 1
3 3 172800 277.114 24.477 0.000 22.681 0 2457391.000 1
3 4 172800 277.114 24.477 0.000 22.681 0 2457391.000 1
3 5 172800 277.114 24.477 0.000 22.681 0 2457391.000 1
3 6 172800 277.114 24.477 0.000 22.681 0 2457391.000 1
3 7 172800 277.114 24.477 0.000 22.681 0 2457391.000 1
3 8 172800 277.114 24.477 0.000 22.681 0 2457391.000 1
3 9 172800 277.114 24.477 0.000 22.681 0 2457391.000 1
3 10 172800 277.114 24.477 0.000 22.681 0 2457391.000 1
3 1 259200 276.827 24.503 0.000 51.834 0 2457391.000 1
3 2 259200 276.827 24.503 0.000 51.834 0 2457391.000 1
3 3 259200 276.827 24.503 0.000 51.834 0 2457391.000 1
3 4 259200 276.827 24.503 0.000 51.834 0 2457391.000 1
3 5 259200 276.827 24.503 0.000 51.834 0 2457391.000 1
3 6 259200 276.827 24.503 0.000 51.834 0 2457391.000 1
3 7 259200 276.827 24.503 0.000 51.834 0 2457391.000 1
3 8 259200 276.827 24.503 0.000 51.834 0 2457391.000 1
3 9 259200 276.827 24.503 0.000 51.834 0 2457391.000 1
3 10 259200 276.827 24.503 0.000 51.834 0 2457391.000 1
3 1 345600 276.540 24.621 0.000 83.697 0 2457391.000 1
3 2 345600 276.540 24.621 0.000 83.697 0 2457391.000 1
3 3 345600 276.540 24.621 0.000 83.697 0 2457391.000 1
3 4 345600 276.540 24.621 0.000 83.697 0 2457391.000 1
3 5 345600 276.540 24.621 0.000 83.697 0 2457391.000 1
3 6 345600 276.540 24.621 0.000 83.697 0 2457391.000 1
3 7 345600 276.540 24.621 0.000 83.697 0 2457391.000 1
3 8 345600 276.540 24.621 0.000 83.697 0 2457391.000 1
3 9 345600 276.540 24.621 0.000 83.697 0 2457391.000 1
3 10 345600 276.540 24.621 0.000 83.697 0 2457391.000 1
3 1 432000 276.377 24.717 0.000 103.369 0 2457391.000 1
3 2 432000 276.377 24.717 0.000 103.369 0 2457391.000 1
3 3 432000 276.377 24.717 0.000 103.369 0 2457391.000 1
3 4 432000 276.377 24.717 0.000 103.369 0 2457391.000 1
3 5 432000 276.377 24.717 0.000 103.369 0 2457391.000 1
3 6 432000 276.377 24.717 0.000 103.369 0 2457391.000 1
3 7 432000 276.377 24.717 0.000 103.369 0 2457391.000 1
3 8 432000 276.377 24.717 0.000 103.369 0 2457391.000 1
3 9 432000 276.377 24.717 0.000 103.369 0 2457391.000 1
3 10 432000 276.377 24.717 0.000 103.369 0 2457391.000 1
3 1 518400 276.315 24.670 0.000 111.529 0 2457391.000 1
3 2 518400 276.315 24.670 0.000 111.529 0 2457391.000 1
3 3 518400 276.315 24.670 0.000 111.529 0 2457391.000 1
3 4 518400 276.315 24.670 0.000 111.529 0 2457391.000 1
3 5 518400 276.315 24.670 0.000 111.529 0 2457391.000 1
3 6 518400 276.315 24.670 0.000 111.529 0 2457391.000 1
3 7 518400 276.315 24.670 0.000 111.529 0 2457391.000 1
3 8 518400 276.315 24.670 0.000 111.529 0 2457391.000 1
3 9 518400 276.315 24.670 0.000 111.529 0 2457391.000 1
3 10 518400 276.315 24.670 0.000 111.529 0 2457391.000 1
3 1 604800 276.266 24.622 0.000 118.825 0 2457391.000 1
3 2 604800 276.266 24.622 0.000 118.825 0 2457391.000 1
3 3 604800 276.266 24.622 0.000 118.825 0 2457391.000 1
3 4 604800 276.266 24.622 0.000 118.825 0 2457391.000 1
3 5 604800 276.266 24.622 0.000 118.825 0 2457391.000 1
3 6 604800 276.266 24.622 0.000 118.825 0 2457391.000 1
3 7 604800 276.266 24.622 0.000 118.825 0 2457391.000 1
3 8 604800 276.266 24.622 0.000 118.825 0 2457391.000 1
3 9 604800 276.266 24.622 0.000 118.825 0 2457391.000 1
3 10 604800 276.266 24.622 0.000 118.825 0 2457391.000 1
3 1 691200 276.005 24.546 0.000 146.535 0 2457391.000 1
3 2 691200 276.005 24.546 0.000 146.535 0 2457391.000 1
3 3 691200 276.005 24.546 0.000 146.535 0 2457391.000 1
3 4 691200 276.005 24.546 0.000 146.535 0 2457391.000 1
3 5 691200 276.005 24.546 0.000 146.535 0 2457391.000 1
3 6 691200 276.005 24.546 0.000 146.535 0 2457391.000 1
3 7 691200 276.005 24.546 0.000 146.535 0 2457391.000 1
3 8 691200 276.005 24.546 0.000 146.535 0 2457391.000 1
3 9 691200 276.005 24.546 0.000 146.535 0 2457391.000 1
3 10 691200 276.005 24.546 0.000 146.535 0 2457391.000 1
3 1 777600 275.791 24.009 0.000 210.153 -5 2457391.000 1
3 2 777600 275.791 24.009 0.000 210.153 -5 2457391.000 1
3 3 777600 275.791 24.009 0.000 210.153 -5 2457391.000 1
3 4 777600 275.791 24.009 0.000 210.153 -5 2457391.000 1
3 5 777600 275.791 24.009 0.000 210.153 -5 2457391.000 1
3 6 777600 275.791 24.009 0.000 210.153 -5 2457391.000 1
3 7 777600 275.791 24.009 0.000 210.153 -5 2457391.000 1
3 8 777600 275.791 24.009 0.000 210.153 -5 2457391.000 1
3 9 777600 275.791 24.009 0.000 210.153 -5 2457391.000 1
3 10 777600 275.791 24.009 0.000 210.153 -5 2457391.000 1

@milancurcic
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OK, the fact that you got both traj_file_1 and con_file_1 is indicative of success. We'll work on fixing the spurious warnings.

@khorsans
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Dear curcic,

Thank you for your response.

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@milancurcic @khorsans