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Nextflow 22.03+ Removed Operators used in sci-bbi #50

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acmullen-med opened this issue May 13, 2022 · 0 comments
Open

Nextflow 22.03+ Removed Operators used in sci-bbi #50

acmullen-med opened this issue May 13, 2022 · 0 comments

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@acmullen-med
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acmullen-med commented May 13, 2022

I was using the sci-demux and the newer versions of Nextflow default to using DSL2 (https://www.nextflow.io/docs/latest/dsl2.html) which has removed certain operators (like into). This resulted in a silent error in failing to make good_sample_sheet

A work around was to add the line nextflow.enable.dsl=1 to my config file.

Either rewriting the nextflow code to remove the deprecated operators or altering the README to suggest the change to the .config might be in order.

Thanks!

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