From 13b8353a00715a1806dc7df721d73bb310832d82 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?David=20Mart=C3=ADnez?=
 <10314744+dmartmillan@users.noreply.github.com>
Date: Thu, 4 Aug 2022 12:19:06 +0200
Subject: [PATCH 1/3] feature: added coverage

---
 .github/workflows/openvariant_tester.yml | 11 ++++-------
 1 file changed, 4 insertions(+), 7 deletions(-)

diff --git a/.github/workflows/openvariant_tester.yml b/.github/workflows/openvariant_tester.yml
index 81cb1a1..dde9a7a 100644
--- a/.github/workflows/openvariant_tester.yml
+++ b/.github/workflows/openvariant_tester.yml
@@ -34,12 +34,8 @@ jobs:
     - name: Install dependencies
       run: |
         python -m pip install --upgrade pip
-        pip install flake8 pytest
+        pip install flake8 pytest pytest-cov
         pip install -e .
-        # if [ -f requirements.txt ]; then pip install -r requirements.txt; fi
-        # pip install tqdm
-        # pip install click
-        # pip install pyyaml
     - name: Lint with flake8
       run: |
         # stop the build if there are Python syntax errors or undefined names
@@ -48,6 +44,7 @@ jobs:
         flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
     - name: Test with pytest
       run: |
-        # python3 -m unittest discover -s tests
-        pytest tests/test_*
+        pytest --cov tests/test_*
+    - name: Upload coverage reports to Codecov with GitHub Action
+      uses: codecov/codecov-action@v3
         

From 162cfb40edd83486058751f0b6a7b8f54d1edf41 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?David=20Mart=C3=ADnez?=
 <10314744+dmartmillan@users.noreply.github.com>
Date: Thu, 4 Aug 2022 12:26:18 +0200
Subject: [PATCH 2/3] fix: fix coverage

---
 .github/workflows/openvariant_tester.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/openvariant_tester.yml b/.github/workflows/openvariant_tester.yml
index dde9a7a..627582f 100644
--- a/.github/workflows/openvariant_tester.yml
+++ b/.github/workflows/openvariant_tester.yml
@@ -44,7 +44,7 @@ jobs:
         flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
     - name: Test with pytest
       run: |
-        pytest --cov tests/test_*
+        pytest --cov .
     - name: Upload coverage reports to Codecov with GitHub Action
       uses: codecov/codecov-action@v3
         

From b8f0d09c8c0f2f3aeab970b328494097ba5153b8 Mon Sep 17 00:00:00 2001
From: Federica Brando <federica.brando@irbbarcelona.org>
Date: Thu, 9 Mar 2023 11:54:09 +0100
Subject: [PATCH 3/3] fix: changed version

---
 setup.py | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/setup.py b/setup.py
index 1a5daa3..4e543e2 100644
--- a/setup.py
+++ b/setup.py
@@ -6,7 +6,7 @@
 
 setup(
     name="open-variant",
-    version="0.7.5",
+    version="0.7.6",
     author="BBGLab - Barcelona Biomedical Genomics Lab",
     author_email='bbglab@irbbarcelona.org',
     description="OpenVariant provides different functionalities to read, parse and operate different multiple input "