Upgrading versions and adding Continuous Integration and Delivery #10
Workflow file for this run
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| name: Build and Publish | |
| on: | |
| push: | |
| tags: | |
| - "**" | |
| branches: | |
| - "**" | |
| permissions: | |
| contents: read | |
| env: | |
| TERM: xterm | |
| jobs: | |
| packages-build: | |
| name: Build packages | |
| runs-on: ubuntu-latest | |
| env: | |
| RUFF_FORMAT: github | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version-file: "pyproject.toml" | |
| - uses: astral-sh/setup-uv@v4 | |
| - name: Check format | |
| run: | | |
| make check-format || true | |
| BOLDRED=$(tput bold && tput setaf 1) | |
| RESET=$(tput sgr0) | |
| echo "${BOLDRED}==> We won't penalise formatting errors for the time being, but we will in the future.${RESET}" | |
| - name: Check lint | |
| run: | | |
| make check-lint || true | |
| BOLDRED=$(tput bold && tput setaf 1) | |
| RESET=$(tput sgr0) | |
| echo "${BOLDRED}==> We won’t enforce linting errors for the time being, but we will in the future.${RESET}" | |
| - name: Build packages | |
| run: make build-dist | |
| - name: Upload packages | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: python-packages | |
| path: dist | |
| docker-build: | |
| name: Build Docker image | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version-file: "pyproject.toml" | |
| - uses: astral-sh/setup-uv@v4 | |
| - name: Check Dockerfile | |
| run: make check-docker | |
| - name: Build Docker image | |
| run: make save-image | |
| # TODO: Enable this when we figure out how to run it without having to download several Gigabytes of data. | |
| # - name: Test Docker image | |
| # run: make run-example | |
| - name: Upload Docker image | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: docker-image | |
| path: oncodriveclustl.tar | |
| check-version: | |
| name: Check version | |
| runs-on: ubuntu-latest | |
| if: startsWith(github.ref, 'refs/tags/') | |
| needs: | |
| - packages-build | |
| - docker-build | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version-file: "pyproject.toml" | |
| - uses: astral-sh/setup-uv@v4 | |
| - name: Check version matching the tag | |
| run: make check-version | |
| packages-publish: | |
| name: Publish packages | |
| runs-on: ubuntu-latest | |
| if: startsWith(github.ref, 'refs/tags/') | |
| needs: | |
| - check-version | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version-file: "pyproject.toml" | |
| - uses: astral-sh/setup-uv@v4 | |
| - name: Download packages | |
| uses: actions/download-artifact@v4 | |
| with: | |
| name: python-packages | |
| path: dist | |
| - name: Publish to PyPI | |
| env: | |
| PYPI_TOKEN: ${{ secrets.PYPI_TOKEN }} | |
| if: ${{ env.PYPI_TOKEN != '' }} | |
| run: make publish-dist | |
| docker-push: | |
| name: Push Docker image | |
| if: startsWith(github.ref, 'refs/tags/') | |
| runs-on: ubuntu-latest | |
| env: | |
| DOCKER_USERNAME: ${{ secrets.DOCKER_USERNAME }} | |
| needs: | |
| - check-version | |
| steps: | |
| - if: ${{ env.DOCKER_USERNAME != '' }} | |
| uses: actions/checkout@v4 | |
| - name: Set up Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version-file: "pyproject.toml" | |
| - uses: astral-sh/setup-uv@v4 | |
| - name: Download Docker image | |
| uses: actions/download-artifact@v4 | |
| with: | |
| name: docker-image | |
| - name: Login to DockerHub | |
| if: ${{ env.DOCKER_USERNAME != '' }} | |
| run: echo ${{ secrets.DOCKER_PASSWORD }} | docker login -u ${{ secrets.DOCKER_USERNAME }} --password-stdin | |
| - name: Push Docker image | |
| if: ${{ env.DOCKER_USERNAME != '' }} | |
| run: make load-image push-image |