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Glioma Web Application

Dependencies

  • Flask
  • Werkzeug
  • Jinja2
  • MySQLdb
  • numpy
  • pandas
  • rpy2

Install with

sudo pip install Flask
sudo pip install Werkzeug
sudo pip install Jinja2
sudo apt-get install python-numpy python-scipy python-matplotlib ipython ipython-notebook python-pandas python-sympy python-nose
sudo pip install rpy2

Database setup

Open mysql

mysql -u <user_name> -p

Make the database

CREATE DATABASE glioma;

Create structure of database

cat data/createDatabase.sql | mysql -u <user_name> -p

Enter all data (sql file for database needs to be downloaded from website).

zcat ../glioma_web_data/glioma.sql.gz | mysql -u <user_name> -p

see settings.cfg, create MySQL database and adjust user/database settings accordingly

Run in Development mode

GLIOMA_SETTINGS=settings.cfg ./app.py