run_tests_digs.yml

name: run pytest on digs with slurm
on:
  pull_request:
    branches: [ "main" ]
permissions:
  contents: read
jobs:
  test:
    runs-on: [self-hosted, Linux, X64, digs]
    steps:

    - name: checkout
      uses: actions/checkout@v4

    - name: setup
      run: |
        ipd update
        ipd ci update_library
        ipd ci repo setup_submodules

    - name: run ruff
      run: |
        ipd ci tests ruff ipd

    - name: run pytest digs
      run: |
        ipd ci tests pytest --exe /home/bench/.conda/envs/ci/bin/python

    - name: check test results
      run: |
        ipd ci tests check

    # - name: build docs
    #   run: |
    #     export LC_ALL=C
    #     cd doc
    #     rm -rf source/api
    #     export PYTHON=../rf_diffusion/exec/bakerlab_rf_diffusion_aa.sif
    #     export PYTHONPATH=..:../rf_diffusion:../rf2aa:../lib/rf2aa/rf2aa/SE3Transformer
    #     $PYTHON -m sphinx.ext.apidoc -o source/api ../rf_diffusion
    #     $PYTHON -m sphinx.ext.apidoc -o source/api ../rf2aa
    #     $PYTHON -m sphinx.cmd.build -M html source build
    #     prnum=$(git branch | cut -b 26-28)
    #     mkdir -p $HOME/public/rf_diffusion/$prnum/
    #     rsync -a build/html/ $HOME/public/rf_diffusion/$prnum/