From 3b8566dc7c85ebdf7e55da0e5b38da500c532e9b Mon Sep 17 00:00:00 2001 From: EM Date: Thu, 22 Feb 2024 15:46:09 +1000 Subject: [PATCH 1/2] feat: add team context to next (#2922) --- next/docs/common/entities.ts | 1 + next/docs/team.mdx | 106 ++++++++++++++++++ next/docs/team/oversight-committee.mdx | 9 ++ next/docs/team/working-groups.mdx | 84 ++++++++++++++ .../anvil-portal/dev/navigation.ts | 13 +++ 5 files changed, 213 insertions(+) create mode 100644 next/docs/team.mdx create mode 100644 next/docs/team/oversight-committee.mdx create mode 100644 next/docs/team/working-groups.mdx diff --git a/next/docs/common/entities.ts b/next/docs/common/entities.ts index 306879b6b..89e7f6e7c 100644 --- a/next/docs/common/entities.ts +++ b/next/docs/common/entities.ts @@ -16,6 +16,7 @@ export interface NavigationEntry { export enum NavigationKey { CONSORTIA = "consortia", OVERVIEW = "overview", + TEAM = "team", } export interface NavigationNode { diff --git a/next/docs/team.mdx b/next/docs/team.mdx new file mode 100644 index 000000000..9ae8f3d9d --- /dev/null +++ b/next/docs/team.mdx @@ -0,0 +1,106 @@ +--- +title: "Team" +author: "AnVIL" +description: "AnVIL is a collaboration between the Broad, JHU, UChicago, RPCI, UCSC, Penn State, WUSTL, OHSU, Harvard Medical School, Vanderbilt & CUNY." +hidden: true +--- + +# Leadership Team + + + AnVIL is a collaborative project between the Broad Institute, Johns Hopkins + University, the University of Chicago, Roswell Park Cancer Institute, + University of California at Santa Cruz, Penn State University, Washington + University, Oregon Health and Sciences University, Harvard Medical School, + Vanderbilt University, and City University of New York. + + +Members of these teams are also involved with platform and software development representing the Terra, Galaxy, Bioconductor, Gen3, and Dockstore teams. + +## American Heart Association + +- [Jennifer Hall](https://www.heart.org/en/about-us/jennifer-hall) + +## Brigham and Women's Hostipal + +- Matthew Lebo +- Cheryl Clark + +## Broad Institute + +- [Anthony Philippakis](https://www.broadinstitute.org/bios/anthony-philippakis-0) +- [Clare Bernard](https://www.broadinstitute.org/bios/clare-bernard) +- Rachel Liao +- Jonathan Lawson + +## Carnegie Institution for Science + +- [Frederick Tan](https://bse.carnegiescience.edu/) + +## City University of New York + +- [Levi Waldron](https://waldronlab.io/) + +## Fred Hutchinson Cancer Research Center + +- [Jeffrey Leek](https://jtleek.com/) +- [Ava Hoffman](https://www.avahoffman.com/) + +## Harvard University + +- [Vince Carey](https://vjcitn.github.io/) + +## Johns Hopkins University + +- [Michael Schatz](https://schatz-lab.org/) +- Enis Afgan +- [Kasper Hansen](https://publichealth.jhu.edu/faculty/2742/kasper-daniel-hansen) +- [Casey Overby Taylor](https://www.hopkinsmedicine.org/profiles/details/casey-taylor) + +## Oregon Health & Sciences University + +- [Kyle Ellrott](https://www.ohsu.edu/people/kyle-ellrott-phd) + +## Massachusetts General Hospital + +- Jeffrey Klann +- Shawn Murphy +- Heidi Rehm +- Victor Castro +- Samuel Aronson + +## Moffitt Cancer Center + +- [Jeremy Goecks](https://www.goeckslab.org/) + +## Penn State University + +- [Anton Nekrutenko](https://nekrut.github.io/lab_site/) + +## University of California, Santa Cruz + +- [Benedict Paten](https://cglgenomics.ucsc.edu/team/) + +## University of Chicago + +- [Robert Grossman](https://rgrossman.com/) + +## Vanderbilt University Medical Center + +- [Robert Carroll](https://www.vumc.org/dbmi/person/robert-carroll-phd) +- Alexander Bick +- Peter Embi +- Josh Peterson +- Jodell Jackson + +## Washington University + +- [Ting Wang](https://genome.wustl.edu/people/ting-wang/) + +## National Human Genome Research Institute + +- [Valentina Di Francesco](https://www.genome.gov/staff/Valentina-Di-Francesco-MS) +- [Chris Wellington](https://www.genome.gov/staff/Chris-Wellington-BS) +- [Shurjo Sen](https://www.genome.gov/staff/Shurjo-K-Sen-PhD) +- [Elena Ghanaim](https://www.genome.gov/staff/Elena-Ghanaim-MA) +- [Robb Rowley](https://www.genome.gov/staff/robb-rowley-md) diff --git a/next/docs/team/oversight-committee.mdx b/next/docs/team/oversight-committee.mdx new file mode 100644 index 000000000..0aa219d14 --- /dev/null +++ b/next/docs/team/oversight-committee.mdx @@ -0,0 +1,9 @@ +--- +description: "NHGRI supports AnVIL through cooperative agreement awards to the Broad Institute and Johns Hopkins University." +hidden: true +title: "Oversight Committee" +--- + +# Oversight Committee + +An [External Consultant Committee (ECC)](https://www.genome.gov/Funded-Programs-Projects/Computational-Genomics-and-Data-Science-Program/Genomic-Analysis-Visualization-Informatics-Lab-space-AnVIL#externalconsultantcommittee), comprised of a multidisciplinary group of experts, is providing feedback to NHGRI regarding how AnVIL should address the needs of the genomics community. diff --git a/next/docs/team/working-groups.mdx b/next/docs/team/working-groups.mdx new file mode 100644 index 000000000..b4dca4233 --- /dev/null +++ b/next/docs/team/working-groups.mdx @@ -0,0 +1,84 @@ +--- +title: "Working Groups" +author: "AnVIL" +description: "AnVIL's working groups take on the responsibility for specific portions of the project and its day-to-day operations." +hidden: true +--- + +# Working Groups + + + AnVIL's working groups take on the responsibility for specific portions of the + project and its day-to-day operations. + + +Working groups are dynamic and are formulated as needed in the course of the project. + +## Data Submission and Ingestion Working Group + +The Data Submission and Ingestion Working Group defines and monitors the technical and operational processes associated with the submission, ingestion, and validation of AnVIL data. + +- AnVIL Data Ingestion team members (Broad) +- Matt Lewis (Broad) organizer + +## Data Access Working Group + +The Data Access working group defines the methods used to securely control and grant access to restricted access datasets hosted within AnVIL, including managing automated credential handoff and developing streamlined processes for handling Data Access Requests. + +#### Co-Chairs + +- Elena Ghanaim (NHGRI) +- Jonathan Lawson (Broad) +- Kate Balaconis (Broad) organizer + +## Phenotype Working Group + +The Phenotype Working Group ensures that the datasets hosted in AnVIL are incorporated in a manner that facilitates research driven by phenotypic questions. + +#### Co-Chairs + +- Robert Carroll (VUMC) +- Jeff Klann (MGH) +- Queenie Ho (VUMC) organizer + +#### Contact + +- Mailing list: [AnVIL-Phenotypes](https://lists.anvilproject.org/lists/anvil-phenotypes.lists.anvilproject.org/) ([anvil-phenotypes@lists.anvilproject.org](mailto:anvil-phenotypes@lists.anvilproject.org)) + +## Portal Working Group + +The portal working group organizes and publishes AnVIL's website. + +#### Co-Chairs + +- Benedict Paten (UCSC) +- Mike Schatz (JHU) +- Ben Vizzier (UCSC) organizer + +## Outreach Working Group + +The Outreach working group creates scalable onboarding content, provides training, and offers support solutions for the AnVIL project. + +#### Co-Chairs + +- Jeffrey T. Leek (Fred Hutch) +- Ava Hoffman (Hutch) +- Frederick Tan (Carnegie) +- Natalie Kucher (JHU) organizer + +#### Contact + +- Mailing list: [AnVIL-outreach](https://lists.anvilproject.org/lists/anvil-outreach.lists.anvilproject.org/) ([anvil-outreach@lists.anvilproject.org](mailto:anvil-outreach@lists.anvilproject.org)) + +## Technical Working Group + +AnVIL's technical working group provides direction and recommendations to the developers of the AnVIL project. + +#### Co-Chairs + +- Mike Schatz (JHU) +- Stephen Mosher (JHU) organizer + +#### Contact + +- Mailing list: [AnVIL-technical](https://lists.anvilproject.org/lists/anvil-technical.lists.anvilproject.org/) ([anvil-technical@lists.anvilproject.org](mailto:anvil-technical@lists.anvilproject.org)) diff --git a/next/site-config/anvil-portal/dev/navigation.ts b/next/site-config/anvil-portal/dev/navigation.ts index 20f6a3ef9..5de2828ee 100644 --- a/next/site-config/anvil-portal/dev/navigation.ts +++ b/next/site-config/anvil-portal/dev/navigation.ts @@ -48,4 +48,17 @@ export const navigation: NavigationConfig = { }, ], }, + team: { + nodes: [ + { + key: "team", + navigation: [ + { label: "Leadership Team", url: "/team" }, + { label: "Working Groups", url: "/team/working-groups" }, + { label: "Oversight Committee", url: "/team/oversight-committee" }, + ], + slugs: ["team", "working-groups", "oversight-committee"], + }, + ], + }, }; From fcfddf9604c2591c186d1b66210aac2915b66903 Mon Sep 17 00:00:00 2001 From: EM Date: Thu, 22 Feb 2024 16:10:32 +1000 Subject: [PATCH 2/2] feat: alphabetically change text (#2922) --- next/docs/team.mdx | 2 +- next/docs/team/working-groups.mdx | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/next/docs/team.mdx b/next/docs/team.mdx index 9ae8f3d9d..d93b5969a 100644 --- a/next/docs/team.mdx +++ b/next/docs/team.mdx @@ -1,8 +1,8 @@ --- -title: "Team" author: "AnVIL" description: "AnVIL is a collaboration between the Broad, JHU, UChicago, RPCI, UCSC, Penn State, WUSTL, OHSU, Harvard Medical School, Vanderbilt & CUNY." hidden: true +title: "Team" --- # Leadership Team diff --git a/next/docs/team/working-groups.mdx b/next/docs/team/working-groups.mdx index b4dca4233..135fe7fb3 100644 --- a/next/docs/team/working-groups.mdx +++ b/next/docs/team/working-groups.mdx @@ -1,8 +1,8 @@ --- -title: "Working Groups" author: "AnVIL" description: "AnVIL's working groups take on the responsibility for specific portions of the project and its day-to-day operations." hidden: true +title: "Working Groups" --- # Working Groups