Trouble installing toffy_env on new computer based on openBlas error

[whitneyt1]

Hello,

When trying to install the toffy_env based on the environment.yml, I receive the following error:

When trying to amend the environment.yml file to pip install pythran-openblas, I receive the error that it's incompatible with the python version.

Thank you!

[srivarra]

Can you try running conda install -c anaconda openblas and see if that fixes it?

[whitneyt1]

I am still receiving the same error

[srivarra]

Could you share your environment.yml file @whitneyt1?

[whitneyt1]

Thanks Sri. once I redownloaded toffy/fresh environment.yml file, installation went smoothly. conda install -c anaconda openblas seemed to fix the problem!

[stantam]

Actually @srivarra, toffy_env installs, but when trying to import packages at the beginning of 3a, we receive this error:

Thanks!

[srivarra]

@whitneyt1 I was unable to replicate the this on my end, but I would like to you give this modified environment.yml file a try below and let me know if the imports in Notebook 3a is resolved or not.

environment.yml

name: toffy_env
dependencies:
  - python=3.8
  - pip
  - openblas
  - numpy
  - scikit-learn
  - pip:
    - git+https://github.com/angelolab/[email protected]
    - git+https://github.com/angelolab/[email protected]
    # - jupyter>=1.0.0,<2
    - jupyter_contrib_nbextensions>=0.5.1,<1
    - jupyterlab>=3.4.3,<4
    - natsort>=0.8
    # - numpy>=1.22,<2
    - seaborn>=0.12.1,<1
    # - scikit-learn>=1.1.3,<2
    - traitlets>=5.2.2
    - watchdog>=2.1.6,<3

[whitneyt1]

Thank you!

…

On Thu, Feb 2, 2023 at 11:56 AM Sricharan Reddy Varra < ***@***.***> wrote: @whitneyt1 <https://github.com/whitneyt1> I was unable to replicate the this on my end, but there I would like to you give this modified environment.yml file a try below and let me know if the imports in Notebook 3a is resolved? environment.yml name: toffy_envdependencies: - python=3.8 - pip - openblas - numpy - scikit-learn - pip: - ***@***.*** - ***@***.*** # - jupyter>=1.0.0,<2 - jupyter_contrib_nbextensions>=0.5.1,<1 - jupyterlab>=3.4.3,<4 - natsort>=0.8 # - numpy>=1.22,<2 - seaborn>=0.12.1,<1 # - scikit-learn>=1.1.3,<2 - traitlets>=5.2.2 - watchdog>=2.1.6,<3 — Reply to this email directly, view it on GitHub <#312 (reply in thread)>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/ALDKSPEV7B5BA3I62NP2RBLWVQGODANCNFSM6AAAAAAULTITZI> . You are receiving this because you were mentioned.Message ID: ***@***.***>

[srivarra]

@whitneyt1 did that fix it?

[stantam]

I deleted the old environment.yml file, replaced it with the contents of the environment file you shared, and received this error:

[srivarra]

Ah, in the environment.yml file replace:

    - git+https://github.com/angelolab/[email protected]

with

    - git+https://github.com/angelolab/[email protected]