variant_calling_pipeline 1.2

• Generating consensus of all the unique variant positions with "-" and "N" that can be used for Gubbins and Beast analysis
• Integrating Gubbins
• Fixed SNP/INDEL matrix bugs, replacing bcftools merge with GATK combine variants
• Fixed Phaster logs and checks

variant_calling_pipeline 1.1.1

Update RTD

variant_calling_pipeline 1.1.0

This release is the the final fully tested version of the original pipeline.
variant_calling_pipeline_v1.1.0.tar.gz